Gene PHATRDRAFT_39421 details

Gene Information

• Locus tag: PHATRDRAFT_39421
• ID: 7195144
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011687
• Strand: -
• Start bp: 480655
• End bp: 482604
• Gene Length: 1950 bp
• Protein Length: 649 aa
• GC content: 58%
• Product: predicted protein
• Protein accession: XP_002183492
• Protein GI: 219126496

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTCTCT CGGTACACGA CAGATTCACA CGGCGGGCCG GTCCGACGAC CATTCCTTCC 
GGAACAACAA CCAGTCGGCG ACACCGCTCT TCCTTGTTCG GTCGATTCCG GACGGGCAGC 
ATCAGTGACG ACAACGACAA TACGGTGCCG GACGAGTACA CGGATGTGGA AAGTCGCAGT 
GACGACGACG AGAACGACCC CGAAAATCCC TCGGCACGCG CCCAACCGCG TCGTCTCCCC 
TTATTCGTCG TCGAAACTAT CGCACTCGAC GACCAAACCG TCACCGTACG CCAACTGCAG 
CAGTCGGCGT CGGCCGCGAA GGAAATGAAC GATTCCTACG CCACATCCAC ACCCACCTTG 
CGCTTCCGGA GTTCCGCCTT TTATCTAGCC GAAGCCGCAC TCGTCGGAGT TGCGACCGGC 
ATATCCGTTG CCGTCTTTAA ATTGTCCATC GAGTTCATCC GCGAAGTGTG CTACAACCAG 
AGCTTTCTCT ACTTGCCCGC GGTGCGGTCG GTGGTACCCG CTGTGGGTGG CGTCGCCGTC 
GGTATCCTCT ACTGGGCCGG ACGAGGAGCC TTTCCACCCG GACTCCGCGG TACCGTACAA 
CTCGTCGATC AACAGGATCG TCGCGGCCTC ACGGTGGACA CGACGCAAAA AGTCAAAACA 
CAGATTGACT TTTTGCGCAA ATCCACCGCC GCCGTCTTTA CCCTCGGTAC CGGATGCAGT 
CTCGGTCCGG AAGGACCCTG CGTCGAAATC GGGATGAACG TCGCCCGCGG CTGTATGGAC 
GTCAAACCGG AATTCCTCTC GCGTCCACGG CCGCACTGGA ACGTTTGTTT GCTCAATTGT 
GGGGCCGCTG CCGGAGTCGC CGCGGGTTTC AACGCGCCCT TGGCCGGCGT CTTCTTCACC 
CTCGAAGTCA TGCAGAGCGC ACTGAACGGG GTCCGCCAAG AAGAACAGGA AAAGCAAACA 
CTCCAGGGGA ACAATAGTGA CCTCAACGCG GCTAGCAACG CCGTATCCGC GACGGAAAAC 
ATTACTCCCA TTCTGTTGGC GTCCGTCTTG TCCGCGCTCG TAGCCCGGAC CATACTAGGC 
GACACGCTCG TCTTGAGCTT GTCGGAATAT TCCCTGGAAA CACCACTCAT CGAATTGCCC 
CTCTACCTGT TGCTCGGCGT GATTTCGGGC TTTGTGGCCT TCTCTTTCAG CAAGGCCGCC 
AACTGGAGCC AGGCTTTCTT CTCGGGAGAG GTTGGTGGCG AATCGATCCA GAGCTTCATG 
AGTTGCCTAC CGGAACCGGT CAAACCAGTC ATTGGGGGTT TCGCGTGCGG CTTGGTTGGT 
CTGGTATTTC CCCAGATTCT GTTCTTTGGC TACGAAACGC TCAACTCCCT CTTGGCCAAC 
GCTTCTTTAC CAACGTCACT ACTTTTTTCC TTGCTTATCG TAAAGACCAT CATGACCGCC 
GTATCGGCCG GATCCGGGTT GGTTGGTGGC ACCTTTGCAC CTTCACTGTT TCTCGGTGCC 
ATGGTCGGTG CGGCCTTTCA CAACGTCGCA ACCATCGTCT TCCAAACGCT CATGACGTCG 
TTTCCTTGGG AAAGTGTGGG AGTGCTGTCC AGTACCGCGG CTCCGGTACT AGTCCTCGCG 
GACGTTCCCG CCTACGCCAT GGTCGGTGCC GCCTCAGTTT TGGCCGCCCT TTTTCGGGCT 
CCGCTCACGG CCAGCCTTTT ACTCTTTGAA TTGACCCGGG ACTATGACGT CATCTTGCCG 
CTCATGGCTA GTGCCGGTGT GGGTAGTCTG GTGGGGGACA TTCTGGAAGA CAAGGTACAA 
AACGCGCGGA GAACACCGCC ACCGAACGTT TCGGAGGCTC CTTCGCCAGC GACTCTTCCG 
GTGCCCCCAC GAAGGCGGGA CAAAGATTCC GTCTCCTGGG GAGATTTGGC CGACAAGAAG 
AAAAGCTCGA CCACTAGATC GGTCAAATAG 

 

Protein sequence

MPLSVHDRFT RRAGPTTIPS GTTTSRRHRS SLFGRFRTGS ISDDNDNTVP DEYTDVESRS 
DDDENDPENP SARAQPRRLP LFVVETIALD DQTVTVRQLQ QSASAAKEMN DSYATSTPTL 
RFRSSAFYLA EAALVGVATG ISVAVFKLSI EFIREVCYNQ SFLYLPAVRS VVPAVGGVAV 
GILYWAGRGA FPPGLRGTVQ LVDQQDRRGL TVDTTQKVKT QIDFLRKSTA AVFTLGTGCS 
LGPEGPCVEI GMNVARGCMD VKPEFLSRPR PHWNVCLLNC GAAAGVAAGF NAPLAGVFFT 
LEVMQSALNG VRQEEQEKQT LQGNNSDLNA ASNAVSATEN ITPILLASVL SALVARTILG 
DTLVLSLSEY SLETPLIELP LYLLLGVISG FVAFSFSKAA NWSQAFFSGE VGGESIQSFM 
SCLPEPVKPV IGGFACGLVG LVFPQILFFG YETLNSLLAN ASLPTSLLFS LLIVKTIMTA 
VSAGSGLVGG TFAPSLFLGA MVGAAFHNVA TIVFQTLMTS FPWESVGVLS STAAPVLVLA 
DVPAYAMVGA ASVLAALFRA PLTASLLLFE LTRDYDVILP LMASAGVGSL VGDILEDKVQ 
NARRTPPPNV SEAPSPATLP VPPRRRDKDS VSWGDLADKK KSSTTRSVK