Gene PHATRDRAFT_39006 details

Gene Information

• Locus tag: PHATRDRAFT_39006
• ID: 7194703
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011686
• Strand: -
• Start bp: 109037
• End bp: 111043
• Gene Length: 2007 bp
• Protein Length: 668 aa
• GC content: 51%
• Product: predicted protein
• Protein accession: XP_002183155
• Protein GI: 219125789

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.517261
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGTCCC CAAATGCGAT AGACCCGCAC CAGCCGACGC GTTCAGGTTC GTCCCAAGGG 
CTTCCGCAGT CTTCGAGATC CAGAGACCAA TCCATGCGCA TAAGTCCGTC GAATGGAGAC 
TCTGACTGCC AACAATGGCG TCCCTTCGCG CTCCCTTCGA ATCGAGATGC GAGTTACGTG 
CAAAAGAGTG CTGGCTCGCA AGTAACGCGT CTCGACGAAG TCAAAACAGT TTTGCCGACA 
AACTTTGCCA CTGCACCAAT CTTTCGTGGT GTACCGGCCA TTCAACCCGG AGAGAACTTT 
TGTTCCTCGA CAACGGGCCT GGCAAGTACA TCTCCTGAAG AATTAAAGCC CTCATCGGAC 
TGTGTTCGTA GAGGCGGAGC TACATCCGAA TCGACGTATT TGGACCATCT GGTTGATATG 
AGCAGTATCA ACAGTTCCTT CTACAACGAA GTTGGTGCTG GTACTAGTCC CAATACTGAT 
CCTAGTCCTG GTCTTCCAAT TGGATGCTCT CCAGTTTCAA CGAGACAGAG CGGCAAGGAA 
TCCCAGCCCT TCCTGCCGAC ATCTTTGCCC ATTTCGTTCC GTGATCTGGC CTCGGGAATA 
CCCGGGGAAG TCAAGTCCAA TTTTCTGACT GGCGAACCCT TACTTATGGA TGAGGATGAT 
TTGTCCATAT CTATCGAAGA TGAAACCAAT GCTCACTTCA ACGATACTAA TTCGGTGAAC 
TTGGACCCAA CAAAAAATAC AGCAGCAAAG AAAACGCCTT CGCGCACGTT ACGTCCCATT 
TCCACTTCTA GAAATTCGTC ATCCCTTAAG AAAGGATCGA CGATTAACGC ACGTTCCCGT 
AAACGCAAGA AAACACCCTC CGTCTCAACG ATCTCCCATC GGGACGAGAA TTTTTTGGGC 
AGGAAGCCCA AGTTTGTCAA AGACCCTGTG TTTTTGAACT CGGCGCCCAG CTCCAACTCT 
ATCTCAAGCA GGCAGAAAAG GGCGACTCTT GAGTTAGTAG GTCCCGACGC GCCCCAAATG 
CAAACTCTAT GGCGCATGTT AGCCTTTCTC GAAGGTAACC CCAATCCAAC ATTCTCGACT 
GTAGCTAGCG ATGTCCGGAA GGAGATTGCT CTCTGTACAA AGCGTCATCT GGATGGGGAG 
CACCGCTTCC GTCACTTACC CGGTGCCATC TTTGAGCGTC TCGTAGCCCA GTTCGGAGGT 
GATTGGTTTC GGGTGGTGTT TTTAGAATCT CAAACTCCCA ATCGTACGGT GAGAAAGAAG 
TCTGTCGAAC CTTTCGATGG TGCAGGTGCA CTTGCGAAGG TTGGTGTGCA ATCAAACCCT 
TGCAAGAGAG TCACGGACCA TCTCTCGAGC CATGTCCCGA AGAGCAGAGG CAGTCTTTCA 
ATCAATCCCA CAGATAGGCT TGTTGATACT CTGGTGATAA GCGAAGCAGA ACAAGGACGC 
ACAGAGACCT CTCCCTTGAA AACAGTCAAA GATGGCAGTG TTGATAAGAA AGAAGCCTTA 
GGTCGAGGCA GCACAGCAGG TGTCCAACTT ATCGAGGCAC CCTCAACCAT GACGAAGGAA 
TCGTCACCCA AAGCTCGCAC ATCGACAGTG ATGGAAGAAT CCGAGCATCC ATCACTTGCA 
AAGTATGAGA ATCCTGCGAA TGCTACGCTG CCAATCACAG GAAATACAAA GGCTAGCCCT 
AACATCGTCT TGGAAGGCTT GGTAGAAAAC GTATTGCGGG GGAATGTGGT TTTAGCGCCA 
GTGGGCCACA ACACACAAAT TCCAACGGCA CCCGAATTGT GCGTCGCGTA CGGTTACTTT 
CTCGGACAGC GCGGATCCTT GTCTCCAGCA CTTCCGTTGT CGCCATTGTG CAAGTCTCGG 
CCTCGCCACG AGGAACAATT ACTTTGCCAG GCTCGCACGG GATCGGCACT CGTCAGTGAC 
TTGTCCCGTC CGGAACGATA CACCTTTTGG AAAGCTTTGT GGACATTGCA ATCCGACGAA 
GCGACTGCTT TCGCAAACAC GGTGTAG 

 

Protein sequence

MASPNAIDPH QPTRSGSSQG LPQSSRSRDQ SMRISPSNGD SDCQQWRPFA LPSNRDASYV 
QKSAGSQVTR LDEVKTVLPT NFATAPIFRG VPAIQPGENF CSSTTGLAST SPEELKPSSD 
CVRRGGATSE STYLDHLVDM SSINSSFYNE VGAGTSPNTD PSPGLPIGCS PVSTRQSGKE 
SQPFLPTSLP ISFRDLASGI PGEVKSNFLT GEPLLMDEDD LSISIEDETN AHFNDTNSVN 
LDPTKNTAAK KTPSRTLRPI STSRNSSSLK KGSTINARSR KRKKTPSVST ISHRDENFLG 
RKPKFVKDPV FLNSAPSSNS ISSRQKRATL ELVGPDAPQM QTLWRMLAFL EGNPNPTFST 
VASDVRKEIA LCTKRHLDGE HRFRHLPGAI FERLVAQFGG DWFRVVFLES QTPNRTVRKK 
SVEPFDGAGA LAKVGVQSNP CKRVTDHLSS HVPKSRGSLS INPTDRLVDT LVISEAEQGR 
TETSPLKTVK DGSVDKKEAL GRGSTAGVQL IEAPSTMTKE SSPKARTSTV MEESEHPSLA 
KYENPANATL PITGNTKASP NIVLEGLVEN VLRGNVVLAP VGHNTQIPTA PELCVAYGYF 
LGQRGSLSPA LPLSPLCKSR PRHEEQLLCQ ARTGSALVSD LSRPERYTFW KALWTLQSDE 
ATAFANTV