Gene PHATRDRAFT_38720 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_38720 
SymbolLhcx4 
ID7203779 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011685 
Strand+ 
Start bp53010 
End bp53733 
Gene Length724 bp 
Protein Length212 aa 
Translation table 
GC content50% 
IMG OID 
Productprotein fucoxanthin chlorophyll a/c protein 
Protein accessionXP_002182760 
Protein GI219124963 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.276094 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTGT TCACCATCTT CTTGCCCCTG GTTTTAGTGG GAACCGCCGC TGGCTTTGCC 
TCTGGCCCGT TCTCCAAGAA GGCTTCTCCG TCACCAGTAA GTTGTCTCAC ACCGAGACCG 
ATCTCATGTC CACTTGACGA AAGCATTGTC TTATGATCAT AATTTCTCAT TTACTCTGCA 
GGAGGTATCA ATTGAAAGTA TGCCTGGTAT CGTGGCGCCC ACTGGATTCT TTGATCCACT 
CCGCTTCGCT GAAAGGGCCC CGTCGAACAC GCTTAAGCGC TACCGCGAGT GTGAACTAAC 
GCATGGCCGC GTTGCTATGT TGGCAACGGT GGGTTTCCTC GCCGGCGAAG CGGTTCAAAA 
TACGAACTTT CTATGGAACG CCCAAGTTTC GGGGCCTGCT ATAACGCATA TTCCACAGAT 
TCCAGCAACT TTTTGGGTCT TGCTCACCCT GTTTATCGGT GTGGCCGAAT TGTCACGTGC 
GCAAACTGCC ATGGTTCCCC CTAGTGACAT TCCCGTGGGT AAGGCTGGCC GAATGCGTGA 
AGATTACAAT CCTGGGGACA TTGGATTCGA CCCTCTCAAT TTAATGCCCG AAAGTTCCGA 
GGAGTTCTAT AGGTTGCAGA CTAAAGAACT ACAGAATGGG CGTTTGGCCA TGCTGGGTGC 
TGCAGGTTTC TTGGCTCAAG AAGCAGTTAA TGGGAAGGGT ATTTTGGAGA ATTTGTTTGG 
CTAG
 
Protein sequence
MKLFTIFLPL VLVGTAAGFA SGPFSKKASP SPEVSIESMP GIVAPTGFFD PLRFAERAPS 
NTLKRYRECE LTHGRVAMLA TVGFLAGEAV QNTNFLWNAQ VSGPAITHIP QIPATFWVLL 
TLFIGVAELS RAQTAMVPPS DIPVGKAGRM REDYNPGDIG FDPLNLMPES SEEFYRLQTK 
ELQNGRLAML GAAGFLAQEA VNGKGILENL FG