| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_32401 |
|---|
| Symbol | |
|---|
| ID | 7196590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011669 |
|---|
| Strand | - |
|---|
| Start bp | 2395066 |
|---|
| End bp | 2396775 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002177505 |
|---|
| Protein GI | 219111507 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.114627 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGA AAAAGCAACC CGTTATCGCT GAGCCCGACA CGATGAATGG CGACATCTTT
CTGAGCATTG CTGTTGCCTT CCTCGCTATC ATCGCCGTTA ACGTCGTGAT CAAGCTTGTC
CAGTATCTGA AGCGAACTTT TGCCAGCAAG GTACTTAAAA CGATTATGCT GCCACCATCA
TTGCTTGCTC TTCCTCTTCT CACATCTTTC TCTCGTGTGT AGCCTACAAC GGCCAAGATC
CGTCAGGTCT TCCCGGGTGC CCAGACGAAC GATCAGCTCG TCGAAACGAT CAGATCCAGT
CTCGAAAAGT TCGGATTCGG AGAAAACTCC CTCATTGCTA CCTCCTTGTG TTGCGACGAA
GTCAACCGTC CCCTCGATAA GGCTCTGTCG GAGACCTACG GTAGCTACTT CTCCATGGGA
GGTCTCGCTG GCTTCCCCTT TGGAGGTCTG ACCTCCTTCG GAGCCATGGC TGCGCACATC
CCCGACGGGG GCTCTTGCGT TGTGGTGTAC GGGCCTCACG TTGGTGTGGA CTCCAAGGGT
AACGTGGGTA CCGTTGAGCG CCGCGGACGT CAGAAGGGCG GATCTTGCTG TGGATCCGGT
GTTGCCGCGG CTGGCTTTGT GAAGTCTTGC CTTGCGGGTG ACGCCAAGCC CCCCGGCGCC
CCCTCGGACC CCCTGGACGC GCAGCAGACG TTCGTGAACT CTATGCTCCT TCCCCATGGA
GCCCGTCTGA ACTCCGCAGA AGAGCCCATG GTCGAGCTTC CGTACGCTTT GTTTGACGCC
CAGGACGAGT TCATGCGCAA GATCATCGAG AAAGGATCCG GTAACGTGGC AGGAAACGGT
CGCATTGCTC TGTTGGGAGG AATCCAGATC AACACCCCCG CCGACCAGCC CGACTACTTT
TTACCACTGC GCTTTGACGT CCTGTCGAAC AAGGGCGAGA CTATTGAGAA GATTATTGAT
GCTCCCTCGC GCGTTACCGC TACAAAGATC TCCAGTGTGT TCCCCAACGC GGTACCGAAC
GAAAAGCTCC TCGCCAAGAT CAACAGCACA CTGGGCTGCT ATGGGTACGG CAAGAACTCT
CTTGTTGCTA CCTCGCTGTG CTGTGACGAA GTCAACCGTC CTTTGGAAGA TGACCTCAAG
GCCGCATTCG GCGAAAACTT CAACATGGGC GGACTCGCCG GCTTTGCGTT TGGAGGTGTC
ACCAGTTTCG GTGCCATGGC AGCGCATATT CCGGACAGTG GCTCGTGTTT GGTGGTGTAC
GGGCCGCACG TAGGTGTCGA CTCGAACGGC AAGGTTGGAA CGGTCGAACG ACGTGGACGG
GCCAAGGGCG GGTCTTGCTG TGGATCTGGT GTCGCCGCAT CGATGTATGT TAACGCTGTA
CGAAATGGCG GTGAAGAAGC TGCTCCGCCT ACGGATCCGC TCGACGCGCA ACAAAGCTAT
GTTGGCAATA TGCTGCTCCC GTACGGTGAA CGCTTGGAAA ATGCTGAAGA CCCGATGGTG
GAACTTCCGT ACGCTCTTTT TGACGCACAG GACGAGCTAA TGCAGAAGAT TGTTGCCAAA
GGCTGCTCGA ACGTTGCGGG CAACGGCAAG ATTGCTCTCT TGGGAGGAAT TCAAATCAAC
ACCCCCGAAG GTATGGCAGA TTACTTTTTG CCCCTTCGTT TCGATATCCG CGACAACCGC
GGAGTTGTTT TTGATGATTT CATGGCCTAA
|
|---|
| Protein sequence | MFKKKQPVIA EPDTMNGDIF LSIAVAFLAI IAVNVVIKLV QYLKRTFASK PTTAKIRQVF
PGAQTNDQLV ETIRSSLEKF GFGENSLIAT SLCCDEVNRP LDKALSETYG SYFSMGGLAG
FPFGGLTSFG AMAAHIPDGG SCVVVYGPHV GVDSKGNVGT VERRGRQKGG SCCGSGVAAA
GFVKSCLAGD AKPPGAPSDP LDAQQTFVNS MLLPHGARLN SAEEPMVELP YALFDAQDEF
MRKIIEKGSG NVAGNGRIAL LGGIQINTPA DQPDYFLPLR FDVLSNKGET IEKIIDAPSR
VTATKISSVF PNAVPNEKLL AKINSTLGCY GYGKNSLVAT SLCCDEVNRP LEDDLKAAFG
ENFNMGGLAG FAFGGVTSFG AMAAHIPDSG SCLVVYGPHV GVDSNGKVGT VERRGRAKGG
SCCGSGVAAS MYVNAVRNGG EEAAPPTDPL DAQQSYVGNM LLPYGERLEN AEDPMVELPY
ALFDAQDELM QKIVAKGCSN VAGNGKIALL GGIQINTPEG MADYFLPLRF DIRDNRGVVF
DDFMA
|
|---|
| |