| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_25506 |
|---|
| Symbol | SMC1 |
|---|
| ID | 7197261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011670 |
|---|
| Strand | + |
|---|
| Start bp | 1337790 |
|---|
| End bp | 1341963 |
|---|
| Gene Length | 4174 bp |
|---|
| Protein Length | 1237 aa |
|---|
| Translation table | |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002177808 |
|---|
| Protein GI | 219112113 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CGTCGTCGTC GTGCGAGTGT GTGTGTGTGT GTGTGTTCGT TGCGGCGTTG ACCGATACTC
GCGTCGTCCA CCATGCCCGT CACGTCGCTG GAACTCGAGA ACTTCAAGTC CTACGCGGGC
TTACAAACCA TCGGACCCTT TCGCGACTTT ACGTCCGTCA TTGGCCCCAA TGGTGCCGGC
AAGTCCAATC TCATGGACGC CGTCAGTTTC GTCCTCGGCG TACAGTCCCG CGATTTGCGC
AGTACCGTCC TGGCGGATCT CGTCTTTCGT CCTCCCACGA CGATTGGTAC TACTGTGAGT
ACTACTAGTA CGACGCCCGC ACTCCGCGCG TCGGCCACGC TCGTGTACGC CGACGCCGTC
ACCGGCGCCG AGACACGCTT CGGACGGACC ATTGGCGTCC GCGGAGTCGG GGAGTACCAC
CTGGACGGGA AGGTTGTTTC CTGGACGGAC TACGAAGCCG CCCTCGCCGA CATTGGGGTC
CTCGTCAAGG CGCGGAACTT TCTCGTCTTT CAGGGAGACG TGGAAGCCTT GGCGCGCAAG
TCGCCGGCGG AACTCACCGC CCTCGTCGAG CAAATTGCCG GATCCGCCGG ACTCGCGGAC
GACTACCGCC AACGACACGC CGACAAGGAA CAAGCGCAGC AGAATACCGT CTTTCTGTTG
CAACAGCAAA AGACGCTCCG GGCCGAGCGG AAACTACTCA AGGAACAAAA GACTGAGGCC
GACCGGTTCC ACCAACTACT CACGGAAAAA GCCGACGTCG AGACCGAGCT CTATTTGTGG
ATACTCTACC ACTTGGACCG GGACCGACAC GAGCGGGACG CCGTCCTCGG GGAACTCCGC
GACGAACGGG ACGCCCACCG CGCCACCGAA CAAACACACG CCGAGACACT CCAACAAGCC
AAAAAGCAAG CCAGTGCGGC CCGGAGGGAG ACCGGACAAC GCCAACAACG CCGGGTGGAA
CTCGCCGCAC TCGCGGATCG ACTAGAACCC GCCGTCATAC AAACCACGGA AGAAATCAAA
TCCCTCGCTA ACAAACTCGC GCAGGACGAG AAACAAGTCG CCAAGAAACA GACGGAGGCC
GATACGCACC GGGAACGAAT CGACGCGATT GCCAAGGAAA TTGCCGACTA CCGCACACAG
CTGACCGCGT TGGAACGCGA CTACGACGAA ATCAAGGCCA ACGCCGCTCC CGTCCAACTC
ACGCCCGAGC AAGAAACACG TTACGAAGCG CTCCGCTACC AGGCTGCTGC CGCCAGTGCC
GCACCAAGAC ACGCGCTCCA TGCCGCCCAA CGACGCCTGG AGCAGGCACG TGCTCACGTT
GCTACACTCC AACACACGCT CCAAGAAGCC CAAGCGGCCC AGGCGGAAAC CGCACGCGAC
GTACAGGCAC TCGACACCCG ACGCGAGAAA CTTACCAAGG TACGGTGGAC GAGTGGGTGG
GTGGTCTGGC ATGTTGGCTT GGATAGGAAC GGAGGGGCAT GCCGTTGCCC ATGCTGTGTT
CTCACGCTCG CGTGTTTTGT TTTTTGTTTT CTCGCGCTTC CTCCCAGAGT CTCGCAAATA
CTACTCAGGA TCTGCAGGCA ACGGAACATG AACTGGTGCA AGTCCAAGGA CAGGCGCAGC
GGGTCCAAGT TCGTCGCCAG GAATTGGATG TTGACATAGA AAAGCTCGAT GCGTCCTTAC
GGGAGGCCAA GTACGACAGT ACCCGTAGTA AGGACGAGGA ATGTTTGGTG CGGGCCATCG
CCTCACTCCA ACAGCACTTT ACCGGGGTTC ACGGTCGACT CGTCGATTTG TGTCGCCCCG
TCTCCCGCAA ATTCAATCTC GCTGTTACCG TCGCGGCCGG GAAAGACATG GACGCCATTG
TTGTGGATAC CAAGCAGACG GCCTTTGAGT GCATCAAGTA CTTGCGCGAA CAGCGCGTCG
GTACGGCCAC CTTTCTGCCC TTGGATAGTC TACAAACGCC GTCACCCGAT AGTACGGAAC
GATTGCGGGC GCACGTGGCC AAGGACGGCC GATACAGCCT GGTAGCCGAC GTAATTGCTT
GTGACGACGC GGTCCACCGA GCCGTGCAAT ACGCCGTGGG GAATACGGTC GTGGCCGAAG
ATCTGGATGC GGCCCGGGAA CTGTGCTTTG GATCGTCCTC GTCGCGGCGA GGCGGTCGGT
CCGAGGGAAA CTCACCCCAA TCTCGCGTCA AGGCGGTCAC CTTGGGAGGG GCCGTCATTA
GCAAAGCGGG TACCATGACG GGTGGAGTCA CACGAGACGA GGACTCCAAA TCGGGACGCT
GGGATGCGCA GAATCTCCAT AAAATTCAGG AGCAGAAAGC TCAGTTGGAA GCGGAACGGG
AGGCCTTGGA TACCGGCGGT GCCTCCAACA GACGCAGCGG AGTTGGGGCT GGTGGGTCTT
TGGGACACGC GAGCAAGATC GAAGAGCTCC GGAACAAGGT TGGTAATCTC CGCAACAAAG
ACCAGTATTC AAAAAGCGAT CTGGAGTTTA CCAAAAAGCA ACTGGAGGAA AAGACGGTGT
TGCTAAAGTC GACCGAAAAG CAGCTCGCCA AGTTGGAAAA ACAAGTGGCG GCGGGCGAAA
AGGAATTTTC CAAGGCCAAT ACTGCGGTCC AGAAGGGAAT TGCCGCAGTC AAGGCGGCGG
AGGATGAGCT TCTTGGAGAT TTCCGTGACG AGACTGGTCT GCGAGATTTG AACGCTTACG
AAGAGGCGAT CGGAAAAAGC CGGGATGAAT TCAACGAGAG GAAACGCACG TTTATGGAGC
ACATTGCGCA GCTGGAGCAA CAAACAAAAT ACGAGTCGGG GCGTGATCTC CAACAGCCCA
TTGTACGTAT CGAAAAGCGG ATCAAGGAAC GTAAGGCTGC TCTTGCCAAA GCGAAGAAGA
AGGAATCTGA ACTGCGCAAG AAGGTCGATG AGGCCAAAGC GAATCTGGCC GAAGCGGAAA
TCAAGGTGGA GGAAGCGATC GACAACGAGA AGAAATTCGA GGAGCAAGTG CAGGATGCTC
AAAGTGCCTT GACGGAGGCC CAGAATGAGC GGATTCGTAT TGACAAAGCC ATTGGATCGG
AAGAGACAGC GCTCGAACGC CTTCGTGCAA AGTTGCATGA TACCTTGCAA AAAGCGCATG
TAGAGGAAGT CTTGCTGCCG CGAGTTGGAG ATGACAACGC ATCTCAGGTC CGCACTCGCT
CTCAGCGCCA CAGCGCTGGT GGAAGCGGCG TGGACGAAGC GGGCGAGTCA GAAAGTCAGT
CCCAATCACA GATGTCGTCC TCAGCGACTG GCGCAAGTAT TCCACTGACA CAGGAGAGCC
GTTCGCGGAC ACACTTCTCC CAGGCAGACA ATACCGTTGT CGTCCTGGAC CTTGAGAAGG
CTTCGAGCGT AGATTTCTCC CGAATGCCCA GTCCTCTGAA GCAGCGCATG AGTGACCGCG
ATGAAAAGCG AATGCGCAAG GAGTTCGAGG ACAAGCTGGC CAAAATAGCT GCCAACATTG
AGAGTATCAC TCCAAATATG AAGGTATGCT CCTACCCGTA AACGGATTTT ACTGTGGATG
AGTCACTGGC TAACACTCTT TTTTTCCGTT TTAGGCCAGC GAAGCGTTCT CTACCATAAC
CGATCGCCTC AAAGGAAGTA GCTCGGACTA CGAAAAGTCC AAAGAGAAGT CTGCGAAAGC
GGCTCAGGCC TTTCAACGAG TCAAGGCAAA GCGCGCTAAA CTATTTAACG AGGCTTTCAA
CCATATTGAT GAGGCTTTGA AGACAATCTA CACCGACATG ACCAAGAGTA GCAAGCATCC
TTTAGGTGGG AATGCCTATC TTAGCCTCGA CGATGCCGAA GAGCCGTATA AAGGTGGAAT
CAAGTTCAAT GCGATGCCAC CGATGAAGCG ATTTCGTGAC ATGGAACAGC TAAGTGGCGG
CGAGAAGACG GTAGCCGCTC TGTCACTATT GTTTGCCATT CATTCGTTCC ACCCGGCGCC
GTTTTTTATC ATGGACGAAA TTGATGCAGC GTTGGACAAC GTCAACCTTC GCAAGGTTTG
CAACTATATC AAGCAACGCA GCCAGACAGA TTTTCAGTGC ATCGTAATCA GTCTCAAAGA
CATGTTCTAC GAGCACAGCC AAGGATTAGT AGGTATCTAC CGCGATGTCG GTACGAACTC
GAGCCATACT CTTACTTTAG ACTTGACGAA ATTT
|
|---|
| Protein sequence | MPVTSLELEN FKSYAGLQTI GPFRDFTSVI GPNGAGKSNL MDAVSFVLGV QSRDLRSTVL
ADLVFRPPTT IGTTVSTTST TPALRASATL VYADAVTGAE TRFGRTIGVR GVGEYHLDGK
VVSWTDYEAA LADIGVLVKA RNFLVFQGDV EALARKSPAE LTALVEQIAG SAGLADDYRQ
RHADKEQAQQ NTVFLLQQQK TLRAERKLLK EQKTEADRFH QLLTEKADVE TELYLWILYH
LDRDRHERDA VLGELRDERD AHRATEQTHA ETLQQAKKQA SAARRETGQR QQRRVELAAL
ADRLEPAVIQ TTEEIKSLAN KLAQDEKQVA KKQTEADTHR ERIDAIAKEI ADYRTQLTAL
ERDYDEIKAN AAPVQLTPEQ ETRYEALRYQ AAAASAAPRH ALHAAQRRLE QARAHVATLQ
HTLQEAQAAQ AETARDVQAL DTRREKLTKS LANTTQDLQA TEHELVQVQG QAQRVQVRRQ
ELDVDIEKLD ASLREAKYDS TRSKDEECLV RAIASLQQHF TGVHGRLVDL CRPVSRKFNL
AVTVAAGKDM DAIVVDTKQT AFECIKYLRE QRVGTATFLP LDSLQTPSPD STERLRAHVA
KDGRYSLVAD VIACDDAVHR AVQYAVGNTV VAEDLDAARE LCFGSSSSRR GGRSEGNSPQ
SRVKAVTLGG AVISKAGTMT GGVTRDEDSK SGRWDAQNLH KIQEQKAQLE AEREALDTGG
ASNRRSGVGA GGSLGHASKI EELRNKVGNL RNKDQYSKSD LEFTKKQLEE KTVLLKSTEK
QLAKLEKQVA AGEKEFSKAN TAVQKGIAAV KAAEDELLGD FRDETGLRDL NAYEEAIGKS
RDEFNERKRT FMEHIAQLEQ QTKYESGRDL QQPIVRIEKR IKERKAALAK AKKKESELRK
KVDEAKANLA EAEIKVEEAI DNEKKFEEQV QDAQSALTEA QNERIRIDKA IGSEETALER
LRAKLHDTLQ KAHVEEVLLP RVGDDNASQA SSVDFSRMPS PLKQRMSDRD EKRMRKEFED
KLAKIAANIE SITPNMKASE AFSTITDRLK GSSSDYEKSK EKSAKAAQAF QRVKAKRAKL
FNEAFNHIDE ALKTIYTDMT KSSKHPLGGN AYLSLDDAEE PYKGGIKFNA MPPMKRFRDM
EQLSGGEKTV AALSLLFAIH SFHPAPFFIM DEIDAALDNV NLRKVCNYIK QRSQTDFQCI
VISLKDMFYE HSQGLVGIYR DVGTNSSHTL TLDLTKF
|
|---|
| |