Gene PHATRDRAFT_25308 details

Gene Information

• Locus tag: PHATRDRAFT_25308
• Symbol: TPI/GapC3
• ID: 7197563
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011670
• Strand: -
• Start bp: 712196
• End bp: 714407
• Gene Length: 2212 bp
• Protein Length: 614 aa
• GC content: 56%
• Product: triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase precursor
• Protein accession: XP_002177987
• Protein GI: 219112471

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.165806
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CGGACACTTG CACATCTTCC TAGATTCCTT TCTCCTCGAG TAGCAGTATC CTACTCATAA 
CGGAACCTCC TATTCTTGTT CTTCCTTGCT ACCTTCCTTC ATGCTCGCCT CTTCCCGTAC 
CGCCGCTGCC AGCGTGCAGC GCATGTCGAG TCGGTACGTT GTCGTCGTGA CGATGTTGGT 
CCAAACGCGA ACGATCGAAC GAAGCAACTA GCGCGGGGGG TCGTGAACTA GAAGAGAAAA 
AAGGCACAAA CTCGCGGTGT TCCCCGAAAC CCCTCACCAA CGTCAGGTTC TGTTCGACTC 
TCGACAAATT CCTTTGTATC CTTTCTGTTT GTGTACAATA ACTCACGTTC CTATTGACGT 
TTTCGTCTCG CCCTCCTAGT GCCTTCCACG CCTCCTCTTT GACCGAAGCA CGCAAGTTCT 
TTGTGGGTGG CAACTGGAAA TGCAACGGTT CGGTCCAACA AGCCGCCGAC CTCGTCTCCA 
TGCTCAACCA GTCTTCCTTG AGTCAGGATA CGGAAGTCGT CATTTGCCCC TCCCAGGTCC 
ACTTGCAGTC CGTCCAGTCC ACCATTCGCG GAGACGTGGC CGTCGGAGCT CAGGACGTTT 
GGACACAGGG CAACGGTGCC TTTACGGGAG AAACATCCGC CAACATGCTC AAAGATCTCG 
GCGTCAAGTG GGCCGTCATT GGACACTCCG AGCGGCGGGG TAAGGGCGAA CCGGACGCCC 
AGGTTGCCGC CAAGGCCAAG TACGCACTCG ATCAGGGTCT CTCCGTTATC GCCTGCTGCG 
GTGAACCCCT CGAAGCCCGT GAAGCCGGAA CCACCAACGA ATACGTCTTT CCGCAAATCA 
AGGCCTACGT CGACGCTTTG GAGCCCAAGG ACTGGGACCG CGTCGTCATT GCCTACGAAC 
CCATCTGGGC CATTGGCACC GGACTGACCG CCACTCCGGA ACAAGCCCAA GATACGCACG 
AGGCGATTCG CCAATACCTC GGACAAGTCG CCGGTGCCGA AGTCGCCGCC AATACCCGCA 
TTCTTTATGG AGGATCCGCC AGTGCCAAGA CCGCCCCGGG ACTCTCCGCG AAACCGGATA 
TCGACGGATT CCTCGTCGGG GGCGCCTCGC TCAAACCAGA ATTCGCCGAT ATTGTCAACT 
GCCAAGGCGA TACCAAGTCA CTCAAGCCGG TCAATATCGG AATCAATGGA TTCGGTCGTA 
TTGGACGCCT CGTCATGCGC GCCGCGCAGA ACGACCCTAT GATCAATATT GTGGCCGTCA 
ACGATCCCTT TATCCCGACC GATTACATGG AGTACATGTT CCAGTTTGAT TCCACCCACG 
GTCTCTACAC TGGCACCGTC AATATGGTGG ACGAATCCAA CATTGCCGTC GACGGAAAAC 
CCATTCGTGT CTTTAACGAA CGCGACCCCT CCAAGATCCA GTGGGGCAGT GCCGGGGCCG 
ACTACGTGAT TGAGTCGACC GGTATTTTCA CCACCACCGA AAAGGCTTCG GCACACATGG 
CGGGTGGAGC CAAAAAGGTC GTCATCTCGG CACCCTCCGG CGATGCACCC ATGTTCGTCA 
TGGGCGTCAA CCAAGAGAAG TATGAGTCCT CCATGGACGT GGTTTCCAAC GCATCCTGCA 
CCACTAACTG TCTCGCGCCC TTGGCCAAGG TCGTCAACGA CGAGTTCGGA CTCAAGGAGG 
GTCTCATGAC CACGGTCCAC GCCGTCACGG CCACGCAGCA GACCGTCGAT GGTCCGTCGC 
AGAAGGACTG GCGTGGAGGC CGTGCGGCCT GCTACAACAT TATTCCGTCG AGTACGGGAG 
CCGCCAAGGC CGTGGGCAAG GTCATTCCCG CCCTCAACGG TAAACTCACC GGAATGAGCT 
TCCGCGTCCC AACCATTGAC GTGTCCGTCG TGGACTTGAC TTGCCGTCTG GACAAGGGTG 
CGCCATACGC CACCATCTGT GCCGCCATCA AGGCCGCGTC CGAAGGTCCC ATGAAGGGCA 
TCTTGGGATA CCAAAATAAA GATGTGGTGA GCTCTGACTT TATCAGCGAC TCGCATTCCT 
CCATCTTTGA CGAAAAGGCG GGTATCGCCT TGACGGACGA TTTTGTCAAG CTCGTATCCT 
GGTACGACAA CGAAGCCGGT TACAGTATGC GTGTGTTGGA TCTGATCAAG CACATGGAGA 
AATCCAAATG AACGAAAGTA ACGTAAACGT TTTGTAAAGA TTGAAAACAG CC 

 

Protein sequence

MLASSRTAAA SVQRMSSRAF HASSLTEARK FFVGGNWKCN GSVQQAADLV SMLNQSSLSQ 
DTEVVICPSQ VHLQSVQSTI RGDVAVGAQD VWTQGNGAFT GETSANMLKD LGVKWAVIGH 
SERRGKGEPD AQVAAKAKYA LDQGLSVIAC CGEPLEAREA GTTNEYVFPQ IKAYVDALEP 
KDWDRVVIAY EPIWAIGTGL TATPEQAQDT HEAIRQYLGQ VAGAEVAANT RILYGGSASA 
KTAPGLSAKP DIDGFLVGGA SLKPEFADIV NCQGDTKSLK PVNIGINGFG RIGRLVMRAA 
QNDPMINIVA VNDPFIPTDY MEYMFQFDST HGLYTGTVNM VDESNIAVDG KPIRVFNERD 
PSKIQWGSAG ADYVIESTGI FTTTEKASAH MAGGAKKVVI SAPSGDAPMF VMGVNQEKYE 
SSMDVVSNAS CTTNCLAPLA KVVNDEFGLK EGLMTTVHAV TATQQTVDGP SQKDWRGGRA 
ACYNIIPSST GAAKAVGKVI PALNGKLTGM SFRVPTIDVS VVDLTCRLDK GAPYATICAA 
IKAASEGPMK GILGYQNKDV VSSDFISDSH SSIFDEKAGI ALTDDFVKLV SWYDNEAGYS 
MRVLDLIKHM EKSK