Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_228 |
Symbol | |
ID | 7194815 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011686 |
Strand | - |
Start bp | 340302 |
End bp | 343634 |
Gene Length | 3333 bp |
Protein Length | 1028 aa |
Translation table | |
GC content | 49% |
IMG OID | |
Product | probable serca-type calcium ATPase |
Protein accession | XP_002183209 |
Protein GI | 219125902 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GAAGGTCTAT CGGAAAGTCA AGCATCGGCA AGGCTGGTGC AATTTGGTAA GAACTCGTTG GAGCAATCCA AGTCGAAGTC TACTTGGCAG CTTATACTGG AACAATTCGA AGATCGACTT GTACAAATTC TTCTGGTCGT CGCGCTCCTT TCGGGTGTCT TTTCCTACTT TGAAGTCCGT CAGAGTGCCA CTGCAGCTGC CGAACTCGCC ACGGATGAGG CCTTGTGGAA GAGCTTTGTT GAACCCCTTG TAATTTTGGC GATTTTGGTA GTAAACGCTG CTGTTGGTGT TTGGCAATCC CAAAGTGCCA GTGACAGTCT CGATGCTTTA CAGCGTATGC AGTCGGCGAC GGCCACAGTG CTACGAGATG GCGTTTGGAA ATCTTCCCTC GAAGCTTCCG ATCTCGTTCC CGGAGATATC ATTGAGTTAC GAGTAGGGGA TAAAATCCCG GCTGATTCGC GACTTCTTTC GTTGCAATCA TCATCGCTTC AAATCGATGA AGGCTCGCTT ACGGGAGAAT CTGTGACTGT TGGAAAATTG CCTGGGGATG AAGGGCGTGC CGATTCACCC AACAGGCCAG TTCAGGACCA AAAGGGCATG CTGTATTCTG GTACCATGGT TACATCCGGT TCTGGGAAGG CAGTTGTCGT TCAGACGGGC ATGACGACGC AGTTTGGAAA AATCCAGCAA GGAGTTACAG CCGCCAAAGC CGAACAGCCG AAGACGCCGT TGGCCATAAA ACTGGACGAA TTCGGAGAGA CTCTGACAAT CATTATTGGA GTGATATGTC TGGCGGTATG GATTGTATCA ATTCCGAAAA TGAACGACCC CAGCTTTGGT TCCGTCTGGG TCGGTGCTGT CTACTACGCA AAGGTGGCCG TCGCTTTGGG CGTGGCTGCC ATTCCGGAGG GTTTACCAGC CGTAATCACC TTGTGTTTAA GTTTAGGAAC TCGGCGTATG GCTGAGCGCA ACGTGATCGT CCGTAAATTG CAGTCGGTGG AGACACTGGG TTGCACATCG GTAATTTGTA CCGACAAAAC GGGCACCCTG ACAACCAACG AGATGACGGT CGTCAGCCTG GTTTTGTTGG AACACGATGA GGTAGGTGAG GTCAGTATTC GCGAACGTAT TGTGGAAGGG TTTTCATACT CGCCGGTAGG TGAAGTCGAG GGCATACAAT ATAACAAAGA GGTCAAGGAG GATCCCTTGG GTTCGGTAGC GGATGTTGCA GCGGTGTGTG CGCTCTGCAA TGATGCCAAG ATCTTGGGCA TTGACTCTGA GGTACTTGAG TCTGAAGACG AAATTAATGA CCCCTCCGGT AAGACCGCCA ACCGAAGTAT TGGCATGACA TTCAAAGGTA CGAAGGATGT AAAGACGGGA AAAGAAAAGA AAGTCAAAAA TACGGAGAAA GCCTTTCAAC GTGTCGGCGA GCCAACTGAA GCGGCTCTTT GTATTCTTGC CGAAAAGCTC GGAGGAATGT CTCACTACCT GGAAAAGGGC CGCTTAGATA AAAAAGGATT GCATTTCGAT GTCCCGCCTA GTGTATTGGC CAGTGCCAAC GTTGAGTCAT GGCGCGAGGC TCATCCGCGC CTAGCTACTT TGGAGTTTAG TCGAGACCGG AAATCTATGT CTGTTTTGTG TGGATTTTCT AAAGGAGATT ATCCTGGGGC GGCAGCCTAT CGCTCTGGCG TCAAATCAAG GAAGGCCGGC AATCGTCTTC TAATCAAGGG TGCTCCCAAT TTACTCATTG AACGCTGCAC GAATGTAAAG TTCCGTGACG GAACCATTGC TCCCATGACG GGCGCTCTCC GACGATCCAT CGAAGATCAG GTATCAAAAA TGGCTGCTCG ACCTCTTCGT TGTCTCGCTT TGGCAATTAA GGATCAAGAC GAACTGGACG ACAGCTTGAA ATCTTTTGAG CCAGACAATG ACCGTGCCGT TTCCCGGCAT CCTCTCTTGT CGGATCCAAC CAATTACAGA AGTGTCGAAT CCGGGTTAAC GTTAGTTGGT ATCGTTGGCA TAAAGGACCC CGCGCGTCCA GAAGTTGCGG AAAGTATGAA GCAATGCACA CGCGCGGGGA TCCGTGTAAT GATGATTACG GGCGATGCAA AAGATACCGC TATTGCGATT GCCAGGGATG TGAACATCTT CTCCCCAGTA GACGATGGAC GACCACTCAA AGCGTATGAA GGCCGCGAGT TCTTCCTCAA GGCGGAACGT GAGCAACTGG AGATTCTTAG AGAAGGTAAC ATTGTTTTCT GCCGAGCCGA GCCAGCAGAC AAGCAGAAGT TGGTGAAAAT GCTACAAAAT TTAGACGAGA TTCCTGCAAT GACTGGGGAT GGAGTGAATG ACGCTCCTGC CTTACAGCAA GCTGCTATTG GAATTGCAAT GGGAATCACC GGGACGGAAG TTTCGAAAAA TGCTGCTGAC ATGATACTTG CCGATGACAA TTTTTCAACG ATTGTCAGTG CTGTCGAAGA AGGGCGACGT ATATACTCCA ACATGCAAGC GTTCATTTGT TTCTTGATTA GTTGTAATAT TGGGGAGATT TGCGCAATTT TTTTTGCTAC TCTTGCTGGC TTCCCAGAAC CTTTGACTGC GATGCATTTA TTGTGGGTCA ACCTCGTAAC GGATGGACCA CCTGCAACTG CACTCGGCTT CAATCCACCG GCACCTGATC TCATGGAGCA GCCGCCGCGG CCCAGCGACG AGCCAATTAT GACTCGATGG TTATTGACGC GCTATTGTAT TACAGGGTTA TACGTTGGAC TCGCAACGAT TGGAATTTTT GCCCAACACT ATCTGTCGCA GGGCATAACG TTGGCTCAAT TGGCAACATG GAGTCAATGT GGCGAGTTTT GGACACCGCC TACAGAATCA GCTTCTTGCA CAGATCTATT CCAGGGCTCA GCTCGTATGC TACCTCAAAC TCTAGCGTTG ACTACTTTAG TTTGTATGGA AATGTTAAAG GCCTTATCGG CAGTTTCCAT GGATGATTCG ATTTTCCGAG TCGGACCTCA AGAAAACAAG TGGTTAATAC TCGGAGTGTC CGGCCCTTTT TTGCTACATC TTATGGTTCT TTACAGCTCA GACCTCGGTA TTCCAGCTCT CGGAGAAAGC TTCGGCATGG TATGTTTATT TGTTCTGCTG TGATAGTTTT CGTCTTGTAT TAATTCATCC AACTTATTTC CTTAACTCCA ATGTTGACTT ATACAGGTAC CTCTTTCGAT CGATGACTGG GCCCTGGTTA TCTCCTGGGC TGCACCCATT CTCTTAGTCG ATGAAATCTT GAAAGCTATA GGACGATGGG TTAATCGAGA AGACCGGAAG AAG
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Protein sequence | EGLSESQASA RLVQFGKNSL EQSKSKSTWQ LILEQFEDRL VQILLVVALL SGVFSYFEVR QSATAAAELA TDEALWKSFV EPLVILAILV VNAAVGVWQS QSASDSLDAL QRMQSATATV LRDGVWKSSL EASDLVPGDI IELRVGDKIP ADSRLLSLQS SSLQIDEGSL TGESVTVGKL PGDEGRADSP NRPVQDQKGM LYSGTMVTSG SGKAVVVQTG MTTQFGKIQQ GVTAAKAEQP KTPLAIKLDE FGETLTIIIG VICLAVWIVS IPKMNDPSFG SVWVGAVYYA KVAVALGVAA IPEGLPAVIT LCLSLGTRRM AERNVIVRKL QSVETLGCTS VICTDKTGTL TTNEMTVVSL VLLEHDEVGE VSIRERIVEG FSYSPVGEVE GIQYNKEVKE DPLGSVADVA AVCALCNDAK ILGIDSEKAF QRVGEPTEAA LCILAEKLGG MSHYLEKGRL DKKGLHFDVP PSVLASANVE SWREAHPRLA TLEFSRDRKS MSVLSYRSGV KSRKAGNRLL IKGAPNLLIE RCTNVKFRDG TIAPMTGALR RSIEDQVSKM AARPLRCLAL AIKDQDELDD SLKSFEPDND RAVSRHPLLS DPTNYRSVES GLTLVGIVGI KDPARPEVAE SMKQCTRAGI RVMMITGDAK DTAIAIARDV NIFSPVDDGR PLKAYEGREF FLKAEREQLE ILREGNIVFC RAEPADKQKL VKMLQNLDEI PAMTGDGVND APALQQAAIG IAMGITGTEV SKNAADMILA DDNFSTIVSA VEEGRRIYSN MQAFICFLIS CNIGEICAIF FATLAGFPEP LTAMHLLWVN LVTDGPPATA LGFNPPAPDL MEQPPRPSDE PIMTRWLLTR YCITGLYVGL ATIGIFAQHY LSQGITLAQL ATWSQCGEFW TPPTESASCT DLFQGSARML PQTLALTTLV CMEMLKALSA VSMDDSIFRV GPQENKWLIL GVSGPFLLHL MVLYSSDLGI PALGESFGMV PLSIDDWALV ISWAAPILLV DEILKAIGRW VNREDRKK
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