Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_22680 |
Symbol | Lhcf13 |
ID | 7194998 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011687 |
Strand | + |
Start bp | 102362 |
End bp | 103125 |
Gene Length | 764 bp |
Protein Length | 197 aa |
Translation table | |
GC content | 52% |
IMG OID | |
Product | protein fucoxanthin chlorophyll a/c protein |
Protein accession | XP_002183291 |
Protein GI | 219126076 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | AGTGCCCTCC CGCATCTTAC AATTCTTGTA GTGCCAGTGA GTAGTCCGAC GTAAATAACA ACATGAAGCT CCTTCTTGCC GCCTCTCTTG TCTCCGTTAC TTCCGCGTTT GCCCCGAGTT CGCTGAAGTC TGCTACCACA GCGCTTCAGG CGTCTCCCTA CGAGAATGAG CTTGGTGTGA TTGAGCCTAC TGGCTTTTTC GATCCTCTCG GTCTCTCGAA GGACATTGAT CAGGAAAAGT TCGACCAATA CCGTACTGCC GAACTCAAGC ATGGACGCGT CGCTCAGCTC GCCGTTATCG GATATGTTGT TCAGGAAATC TACCGCTTCC CCTTCGACAT CGCTCCGGGT CTTCCCTGCG CCGAGGTGCC GAACGGCGTT GCCGCTATCC AGGCAATCCC TGCGCTCGGC TGGGCGCAAA TCTTCTTCTT GGTAGGATCT GTTGACTACT ACGGCTACTT GGGAGACTTT GACGCCGGAA AACCCGATTT GGATCCCGCA GAGATGGAAA AGCGTCAGCT CAACGAACTC CAACACGGCC GCTTGGCCAT GTTGGCGATT CTTGAACTCC TCCGTCACGA TAGCCAGAAC TTGGTGCAGC CCGGATTTGA TGGCCTCAAT AACCTCATCA CGGGTCTCCC TTTCCTTTAC AAGTAAATCG ATAACGGTAT TGTGTAAAGC GAACAAGACG CAGACGTCGA GAACAGTACG CAAAAAGTTG TTTTAGAATA TACTTATAAG CTAATTCAGC GAGTATTGCT CCGC
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Protein sequence | MKLLLAASLV SVTSAFAPSS LKSATTALQA SPYENELGVI EPTGFFDPLG LSKDIDQEKF DQYRTAELKH GRVAQLAVIG YVVQEIYRFP FDIAPGLPCA EVPNGVAAIQ AIPALGWAQI FFLVGSVDYY GYLGDFDAGK PDLDPAEMEK RQLNELQHGR LAMLAILELL RHDSQNLVQP GFDGLNNLIT GLPFLYK
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