| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_20934 |
|---|
| Symbol | IPMDH |
|---|
| ID | 7201753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011678 |
|---|
| Strand | + |
|---|
| Start bp | 951037 |
|---|
| End bp | 952545 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | 3-isopropylmalate dehydrogenase |
|---|
| Protein accession | XP_002180930 |
|---|
| Protein GI | 219120381 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 51 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CTTGTCCCTC TACGGACCTG TCGTTCTACC CATTGGACGA TCCGATCCGA CGGCGGCCGC
TGCTAAGTCC ACATCCAACA AAAGCAACGC AAGTCAACAA CAGTACAAAA CATGGGGCTC
CTTACAAAGT CCCCGTTAGC TCTCATCGTT GTTTTGGGAG TCGCGTCTCT TTCCGATGCC
TTTGTCCCTC AACACTCTCG GTTTGCCCGA CACCCAAGCG TCAAAGATGC CGTCTCGAAA
AAAGATTCTT ACGACATTAC CTTATTACCA GGCGACGGCA TTGGTCCGGA AATTACGGAA
TCCACCAAAA AGGTCCTGAC AGCCTTGTGT GAAAAATGTG GATTCGACAT GAACCTGAAA
GTAGCCTTAA TTGGCGGTGC TGCTATTGAC GCCGTCAACG ACCCCTTTCC ACAAGAGTCT
CTGGAACAGT GCCAAGCGTC CGATTCAGTA CTCTTGGCTT GCATTGGAGG ATACAAGTGG
GACAGTAATC CGAGAGAATT GCGCCCGGAA AGTGGACTGT TGAAAATGCG CAAAGAAATG
GGGCTCTTTG CCAACCTCCG ACCAGCAAAG GTTTTGCCCC AGCTGATTGA CGCCTCGACC
TTGAAGCGCG AAGTGGTAGA AGGCGTCGAT GTCATGGTGG TGCGAGAATT GACCGGTGAT
GTATACTTTG GTACTCCCAA GGGCATCGAG ACGATCAATG GTACGTGCAC CGCATGTTTT
TCGACTACAA CCGAATACTA AAAGAGGCAA CAGACTAAAC ATTTTCGGGT CACGATATCT
CCTATTCTTT ACTCTTGTAT TCTCGTATTT TGAACAGGCG AACGAGTGGG ATACAACAAC
ATGATCTATT CGGAATCGGA AATCGATCGT ATCGCCCGTG TAGCTGGAGA TGTCGCCAGC
AAGCGCGGAA AAAAGCTGTG CAGCGTAGAC AAGGCCAACG TACTAGATGT CAGTCAGCTA
TGGCGAGAAG TTGTGACGGA CGTCATTACC AAAGATTTCC CGGATGTGGA GCTTAGTCAC
ATGTACGTCG ATAATGCCGC TATGCAGTTG ATTCGATGGC CCAAGCAATT TGATACCATT
GTTTGCGGCA ACATTTTCGG TGACATTCTA TCGGACGAAG CTTCCATGTT GGTCGGTTCC
TTGGGTATGC TTCCCTCGGC CTCCATTGGT GAATCCGGGC CGGGAGTGTT TGAACCCTGC
CATGGATCTG CTCCCGACAT TGCTGGAGAA GACAAGGCTA ACCCTCTGGC CATGATTCTG
TCCGCCGCCA TGATGCTCAA GTACGATTTG GACCGGCCTG ATGAAGCGTT GTTGCTCGAG
AACGCCGTTG AAGCCGTACT GGATCAGGGA CTCCGTACGC CGGACATCAA GCAAGAAGGT
GATGGTTGCA AATTGGTGGG TTGCTCCGAG ATGGGCGAGG CGGTGGCCAA GATTGTCACG
GAATTGGACG TTCCCAATAG CGCCGAAGTG AGTGTGTAAA GTAGCGCAAC GCTAATGGTA
GTTCTATCT
|
|---|
| Protein sequence | MGLLTKSPLA LIVVLGVASL SDAFVPQHSR FARHPSVKDA VSKKDSYDIT LLPGDGIGPE
ITESTKKVLT ALCEKCGFDM NLKVALIGGA AIDAVNDPFP QESLEQCQAS DSVLLACIGG
YKWDSNPREL RPESGLLKMR KEMGLFANLR PAKVLPQLID ASTLKREVVE GVDVMVVREL
TGDVYFGTPK GIETINGERV GYNNMIYSES EIDRIARVAG DVASKRGKKL CSVDKANVLD
VSQLWREVVT DVITKDFPDV ELSHMYVDNA AMQLIRWPKQ FDTIVCGNIF GDILSDEASM
LVGSLGMLPS ASIGESGPGV FEPCHGSAPD IAGEDKANPL AMILSAAMML KYDLDRPDEA
LLLENAVEAV LDQGLRTPDI KQEGDGCKLV GCSEMGEAVA KIVTELDVPN SAEVSV
|
|---|
| |