Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_17766 |
Symbol | Lhcr4 |
ID | 7196236 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011669 |
Strand | - |
Start bp | 1848846 |
End bp | 1849845 |
Gene Length | 1000 bp |
Protein Length | 215 aa |
Translation table | |
GC content | 52% |
IMG OID | |
Product | protein fucoxanthin chlorophyll a/c protein |
Protein accession | XP_002177385 |
Protein GI | 219111267 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GCGACGCAAT TAGGCAAACA AAAATCACCA TGAAGACCGC TGTCCTCGCT TCTTTCCTCG CTTCGGCTGC TGCCTTTGCT CCGGCCTCCA ACAATGGTAT GTGGAGTGTA GATCCCGCAA CTGTAGATTA TGTATTGTTA GGGAATAGAT TCGAATTCGC GCAGTGTAAT GTTCCAATGG AGTTCGTGTC CGGACACTTT TTCGTGCTGC CCGGGGATTG TCCCCCAAAA AAGGCTCGTC TCACAGTCAG TGATTCGTTT TTGTAAAATA TGCAGGTCGT TCGGCTACCA TGCTTTTCGA AGATGCTGCT GCCGCCGAAC CGGAAGCCAA GTATGTCGCC AGTGAGTCTC TTCCGTTCAT GGAATACCCT CCCAACCTCA AAGGATACGT CGGTGACGCC GGATTCGATC CCTTCCGTTT CTCTGATTTT CTCCCTATGG ATTTCCTCCG TGAGGCCGAG CTCAAGCACG GACGTATCTG TATGATGGCC ACCGCTGGGT TCGCGGCAGT CGATCTAGGT CTTCGGGTTT ACCCGCTCCC GGAAGGATAC GAAGGCCTCA CATCGGTCAC TGCTCACGAT GCGCTCGTCA AGCAGGGTGG TATGGGTCAG ATGCTTCTCT GGTTTTCCTT CCTTGAGATC TTTGACACAG TGGCCGTCAT TCAGATGCTC AACGGATCCG GCCGCCGACC TGGCGATTTT GGATTTGACC CCGCCGGGTT CCTCAAGAAT GCCGATGCCA AGAAGGAAGA GGATATGATG CTGAAGGAAC TCACCAACGG ACGTCTTGCT ATGTTGGCCT TTAGTGGTAT GGTCACACAG GCGGTGTTGA CCCAGGGTCC TTTCCCCTAC GTCTAAGTCG TCGACGTAGT GACAGTGCGC GAGCGATTGG GATGCCACTC AGCGCTCTCC ACAGTTCGGC TAACTGTAAG CTCTATTATG GAACAGTAAT ATTGCCACTC TTATGCTGGT AGATGATGTT TAATTCGTCG TAAGGTAGTT
|
Protein sequence | MKTAVLASFL ASAAAFAPAS NNGRSATMLF EDAAAAEPEA KYVASESLPF MEYPPNLKGY VGDAGFDPFR FSDFLPMDFL REAELKHGRI CMMATAGFAA VDLGLRVYPL PEGYEGLTSV TAHDALVKQG GMGQMLLWFS FLEIFDTVAV IQMLNGSGRR PGDFGFDPAG FLKNADAKKE EDMMLKELTN GRLAMLAFSG MVTQAVLTQG PFPYV
|
| |