Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PG1524 |
Symbol | menD |
ID | 2553091 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Porphyromonas gingivalis W83 |
Kingdom | Bacteria |
Replicon accession | NC_002950 |
Strand | - |
Start bp | 1601103 |
End bp | 1602836 |
Gene Length | 1734 bp |
Protein Length | 577 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637150163 |
Product | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase |
Protein accession | NP_905665 |
Protein GI | 34541186 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00000332199 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATTCGG ATTATTCGGA TAAGAAAGGC GTAAGCGTAT TGATGGATTT ATTCGAGATG AAGGGCATAC GTAAACTCGT TATGTCGCCC GGTTCGCGAA ATGCTCCTCT TCTGTTTTCT TTCTCCCGGA ATCCCGCTTT CGAGAAATAC GTGATTGCGG ATGAGCGTTC CGCCGGTTTT TTCGCTCTCG GATTGGCTTT GGCCTCGGGT GAAGCCGTAG GATTGGTTTG TACTTCCGGT ACGGCCATGT TGAATTATGC TCCTGCCGTT GCCGAGGCTT TTTACAGGGG GATTCCTTTG GTCGCGGTAA CGGCCGACCG TCCGGCCGAA TGGATCGACC AGGACGAGGG ACAGACGATT CGACAGGAGG GAGCTATGGC CGGTTTCGTT AAGTCGTATT GCAGCTTGAG AGCGGAATTC GATACTTCCG CCTCGGCATG GTATGCCAAT CGCCGTTTGA ATGAGGTGTT GAACCATGCC CTGATGCCCC GGCGAGGACC CGTACACATC AATATGTCGT TTTGCGAACC GCTATACGGG ACTTCCTCCG GATATTCCGG AAAAGAGCGG GCGATAACGT TCGTGAGGGA ACGGCAAGAA TTGCCGGAAG AGGTATGGGA TATGCTCGTA AAGCGGTTTT TGGAAGCTCC CAGAGTGATG ATCGTCGCCG GTTTTTATCC TCCCGACGAA GACGTGTCCG CCGCATTGCA GGATATATGC AAATTTCCCC ATACGGTTTT GTTTGCCGAG AGTCTCTCCA ATATCCGTAC GGATACGGGG ATATGTACGG CAGACCGGGT ATTGGCTGCA GCCGGAGAAG ACGAATCGCT TTATCCGGAA CTCCTTATTT CTTTCGGAGG CTCGTTGATT TCCCGTATGT TGAAAACTTT TCTACGGAGG GCGAAACCTG CGGAGCATTG GGGGATAGAC GAGAGGTTTC CGGCTCCGGA CACTTTCTGT GCGCTTACCC ATCATATATG TACGGGAGCT TCGGGCTTTT GGAAGGAATT CGCCGGACGG TTGAAAGACA AGGCACCGGA GTCCCTTTCA CCGGAAGGAA TTTCCTATGC CGGTTCGTGG CAGAAGATAA AACGGAAGGC GGACCTCCTG CACCGTACCT TTATGGCGGA TGCGGGGTGG AGCGACCTCA AGGCTTTCGA AGTGATTTTA AGGCATATTC CCCATGATGC TGCTTTGCAT GCGGCTAATT CCACGCCCGT ACGTTATCTC CAATTATTCG AACACGCGCA TTATGCGGGA GGAGAATGGA GCAATCGCGG AACCAACGGA ATCGAGGGGG CCACTTCCAC GGCAATGGGG TTTTCCGAAG TATATTCCGG AACCACCCTT TTGATTACGG GAGATCTGAG TTTTATGTAC GATTCCAATG CTTTGTGGAT GCCTTATGTA AACGGGCGGA TACGGGTAAT CGTGATGCGT AACGGAGGAG GGGGGATATT CCGTTTTATT CCCGGGCCGG ATTCTTTGAA GGAATTGGAG ACCTGTTTCG AGACTCCGCT CGAAGTTCCC GTAAGGGAAA TGGCCGGAGC TTACGGATGG AGATATATGA AGGCCGTTTC CGCCGAAGAA CTGGAAACGG TGTTGCCTTC GTTTTTCGCA TCCGGCGACA GGGCGGTCCT GCTCGAGGTG GAAACGCCGA GGTTTGAAAA CGCCCCTGTA TTGAAATCGT ATTTTACATA TATTTCGGGG GAGTCTTACC CCGTAAACCG ATAG
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Protein sequence | MDSDYSDKKG VSVLMDLFEM KGIRKLVMSP GSRNAPLLFS FSRNPAFEKY VIADERSAGF FALGLALASG EAVGLVCTSG TAMLNYAPAV AEAFYRGIPL VAVTADRPAE WIDQDEGQTI RQEGAMAGFV KSYCSLRAEF DTSASAWYAN RRLNEVLNHA LMPRRGPVHI NMSFCEPLYG TSSGYSGKER AITFVRERQE LPEEVWDMLV KRFLEAPRVM IVAGFYPPDE DVSAALQDIC KFPHTVLFAE SLSNIRTDTG ICTADRVLAA AGEDESLYPE LLISFGGSLI SRMLKTFLRR AKPAEHWGID ERFPAPDTFC ALTHHICTGA SGFWKEFAGR LKDKAPESLS PEGISYAGSW QKIKRKADLL HRTFMADAGW SDLKAFEVIL RHIPHDAALH AANSTPVRYL QLFEHAHYAG GEWSNRGTNG IEGATSTAMG FSEVYSGTTL LITGDLSFMY DSNALWMPYV NGRIRVIVMR NGGGGIFRFI PGPDSLKELE TCFETPLEVP VREMAGAYGW RYMKAVSAEE LETVLPSFFA SGDRAVLLEV ETPRFENAPV LKSYFTYISG ESYPVNR
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