Gene PG1288 details

Gene Information

• Locus tag: PG1288
• Symbol: gmd
• ID: 2551440
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Porphyromonas gingivalis W83
• Kingdom: Bacteria
• Replicon accession: NC_002950
• Strand: +
• Start bp: 1366103
• End bp: 1367188
• Gene Length: 1086 bp
• Protein Length: 361 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 637149963
• Product: GDP-mannose 4,6-dehydratase
• Protein accession: NP_905467
• Protein GI: 34540988
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1089] GDP-D-mannose dehydratase
• TIGRFAM ID: [TIGR01472] GDP-mannose 4,6-dehydratase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 34
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGGCATTAA TCACAGGAAT TACAGGGCAG GACGGCTCTT TCCTCGCCGA GTTTCTGATA 
GAAAAGGGGT ACGAAGTGCA CGGTATCCTG CGCCGTTCGT CTTCGTTCAA TACGGGACGA 
ATCGAACACC TCTATCTCGA CGAATGGGTG CGGGACATGA AGCGCGAGCG GCTGATCAAT 
CTGCACTACG GGGACATGAC GGACAGCTCC TCTTTGGTAC GCATCATTCA GACCACTCGC 
CCCTCGGAAA TATACAATCT GGCCGCTCAA AGCCACGTCA AGGTGTCGTT CGACGTTCCG 
GAGTACACGG CAGAAGCCGA TGCCGTGGGT ACGCTTCGCC TCTTGGAAGC GGTGCGAATA 
CTCGGATTGG AGAAGGAAAC GCGGATCTAT CAAGCCTCTA CATCCGAGCT GTTCGGCAAG 
GTGCAGGAAG TGCCCCAACG GGAGAGCACT CCGTTTTACC CCCGATCGCC ATACGGAGTG 
GCCAAGCAGT ATGCTTTCTG GATCACGAAG AACTATCGCG AGAGCTACGG CATGTTTGCC 
GTCAATGGCA TTCTCTTCAA CCATGAGAGC GAACGCCGGG GCGAAACCTT TGTCACCAGA 
AAGATCACAC TGGCTGCAGC CCGCATCAAG CAAGGATTTC AGGACAAGCT CTACCTCGGC 
AATCTGGATG CCCGTCGCGA CTGGGGCTAT GCTCGCGACT ACGTGGAGTG TATGTGGCTG 
ATGCTACAGC ACAATATACC GGAAGACTTC GTCATTGCCA CAGGGGAGAT GCACAGTGTA 
CGCGAGTTCG CCACCCTGGC ATTTCGAGAA GTCGGCATAG AGCTGGAGTG GAAAGGCTGC 
GGAGTGGAGG AGCAAGGTAT AGACATCGCC ACGGGACGGG TTTTGGTAGA GGTGGATCCC 
AAATACTTCC GTCCCTGCGA AGTGGATCAG CTATTGGGAG ACCCGACCAA AGCCAAGACT 
TTACTAAGAT GGAATCCGAC AAAGACCTCT TTCGAAGAAT TGGTACGAAT CATGGTCGAA 
GCAGACATGA GATTTGTCCG AAAATTGCAT ATGAGAGCCG AAATAGACAC TTCTCATAAT 
GAATAA 

 

Protein sequence

MALITGITGQ DGSFLAEFLI EKGYEVHGIL RRSSSFNTGR IEHLYLDEWV RDMKRERLIN 
LHYGDMTDSS SLVRIIQTTR PSEIYNLAAQ SHVKVSFDVP EYTAEADAVG TLRLLEAVRI 
LGLEKETRIY QASTSELFGK VQEVPQREST PFYPRSPYGV AKQYAFWITK NYRESYGMFA 
VNGILFNHES ERRGETFVTR KITLAAARIK QGFQDKLYLG NLDARRDWGY ARDYVECMWL 
MLQHNIPEDF VIATGEMHSV REFATLAFRE VGIELEWKGC GVEEQGIDIA TGRVLVEVDP 
KYFRPCEVDQ LLGDPTKAKT LLRWNPTKTS FEELVRIMVE ADMRFVRKLH MRAEIDTSHN 
E