Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PG0395 |
Symbol | rpoC |
ID | 2551908 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Porphyromonas gingivalis W83 |
Kingdom | Bacteria |
Replicon accession | NC_002950 |
Strand | + |
Start bp | 429064 |
End bp | 433365 |
Gene Length | 4302 bp |
Protein Length | 1433 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637149171 |
Product | DNA-directed RNA polymerase subunit beta' |
Protein accession | NP_904701 |
Protein GI | 34540222 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTTTTA GAAAAGAAAA TAAGATAAAG AACAACTTCT CGAAGATTCG TATCACCTTG GCTTCTCCTG AAGAGATTCT TGAGAACTCA TTCGGAGAAG TATTGAAGCC GGAGACGATC AATTATCGTA CCTACAAGCC GGAACGAGAT GGCCTATTCT GTGAACGCAT CTTCGGTCCG GTTAAGGATT TTGAATGTCA CTGTGGCAAA TACAAGCGTA TTCGATACCG TGGTATCGTA TGTGATCGCT GTGGAGTCGA GGTAACGGAA AAGAAAGTTC GCCGTGAGCG TATGGGGCAC ATCCATTTGG TCGTACCTGT TGCTCATATT TGGTATTTCC GTTCTCTTCC GAATAAGATC GGCTATTTAT TAGGACTACC TACCAAGAAG TTGGATGCCA TCATTTACTA TGAACGCTAC GTTGTTATTC AACCGGGTGT TGCCGAAGGG TTGAGTCAAC TTGATCTATT GTCAGAGGAA GAATACCTCG ACAAGCTTGA TGAAATAGAG CGCACTCACA AGGGCAACCA AAATTTGGAG GATACCAATC CGGACAAATT TATTGCCAAA ATTGGGGCAG AGGCTATTTA TGATCTTCTA TGTCGTGTGG ATCTGGATTC TATTTCCTAC GAATTGCGAG ATCGTGCCAA TACAGATGGT TCGCAGCAAC GTAAAACAGA AGCACTTAAA CGTCTTCAAG TCGTTGAAAG TTTCCGTGCA TCCAAAGGTG TGAATCGTCC TGAGTGGATG GTTATGAAAG TGATTCCGGT TATCCCGCCG GATCTTCGTC CTTTAGTTCC TTTGGATGGT GGACGTTTCG CTACTTCCGA TCTGAACGAC TTGTACCGTC GCGTTATTAT CCGTAACAAC CGTCTCAAAC GATTGATCGA GATCAAAGCT CCTGAAGTTA TCTTACGCAA TGAAAAGCGC ATGCTACAGG AAGCGGTTGA CTCCCTTTTC GACAACTCGC GGAAGTCAAG TGCGGTTAAG TCTGACAACA ATCGTCCTTT GAAATCCCTT TCTGATAGTC TCAAAGGCAA ACAAGGTCGT TTCCGTCAGA ACTTGCTTGG TAAGCGTGTC GATTATTCTG CTCGTTCCGT TATCGTTGTT GGTCCGGAGC TTAAGATGCA TGAGTGCGGA CTTCCGAAAG ACATGGCAGC CGAACTCTAC AAACCCTTCA TCATTCGCAA GTTGATTGAG CGTGGCATAG TGAAGACAGT CAAGAGTGCC AAGAAGATTG TAGACCGTAA AGAGCCTGTT ATCTGGGATA TTTTGGAGTA CGTGATGAAA GGACATCCGG TCCTTCTGAA CCGTGCACCG ACTCTTCACC GACTAGGTAT TCAAGCATTC CAACCCAAAC TGATAGAAGG AAAAGCAATA CAGTTGCATC CATTGAGTTG TACTGCATTT AATGCGGACT TCGATGGAGA CCAAATGGCT GTACACCTTC CTCTGAGCAA CGAAGCTATT CTTGAGGCGC AATTGCTTAT GTTGGCTTCA CATAACATTC TTAACCCTGC CAATGGAGCA CCGATTACCG TTCCTTCACA GGATATGGTA TTGGGACTCT ATTATATTAC CAAGCTACGT CCCAATACCA AAGGGCACGG CCTGATTTTC TATGGCCCTG AAGAAGCGAC AATAGCCTAT AACGAGGGTA AAGTCGATAT TCATGCGCCG ATTAAGGTCT ATGTAGAGGA TTACGAGAAC GGAGAACTTG TTCGTCGTAT GGTAGAGACA TCCGTAGGGC GACTGATGGT AAACGAATAT GTACCGAAGA AGGTAGGCTA TGTCAATGAA GTACTCGGGA AAAAAGCTCT ACGAGATATT ATCGGTAGCG TAATCAAGAT CTGCGGAGTA GCTACAACAG CCAAATTCTT GGATGATATC AAGAATTTGG GTTACTACAT GGCTTTTAAG GGTGGCTTGT CTTTCAACTT GGCAGATGTG CTTATTCCTG ATGAGAAAGA CCAATTGATC CAAGAAGGTT ACACTGCCGT CGAGCAGATT ATGCAAGACT ACAGTATGGG ATTCATCACC TTTAATGAAC GATACAATCA GATTATCGAC ACATGGACAC ATATCAATGG CCGTTTGTCA AATGTTCTGA TCAAGCAACT CAGTTCAGAC AATGACGGAT TCAACTCTGT CTTCATGATG ATGGATTCCG GAGCACGTGG TTCCAAGGAA CAGATTCGTC AGTTGTCAGG TATGCGTGGA TTGATGGCCA AGCCCCAAAA GAGTGGAGCC GAAGGAGGTC AGATTATTGA AAACCCCATT CTTTCAAACT TCAAGGAAGG ACTCTCGGTA CTTGAATACT TTATTTCTAC TCATGGTGCA CGTAAGGGGC TTGCCGATAC CGCATTGAAA ACGGCAGATG CTGGTTATCT CACCCGTCGT CTTGTGGACG TTTCTCACGA TGTTATTATC ACAGAGGAAG ATTGTGGCAC GCTACGCGGA CTGCTTACTA CCGAGCTAAA GCAAAACGAA GATGTCGTTG CTTCCTTGTA CGAACGTATC CTTGGGCGCG TCTCTGTTCA CGATATTATC CATCCTACTA CAGGGGATAT AATCGTTAGA GCTGGAGAAG AGATCAGAGA GCAGGCAGCA CAGATTATCG AAGATTCACC TATCGAAGCT GTTGAAATCC GTTCTGTTCT CACCTGCGAA TCCAAGAAAG GAGTATGTGC CAAGTGCTAT GGTAGAAATC TTGCTACCAA CCGCATGGTA CAACGGGGTG AGGTCGTAGG CGTTATTGCA GCTCAGTCCA TTGGAGAGCC GGGTACACAG CTTACTCTCC GAACATTCCA CGTCGGAGGT ATCGCATCCA ATGTGGCAAC GGAGAATAGC TTGCTCTCCA AATATGATGG TATCTTGGAA TTCGAGGAAC TACGTGCTGT GGATGTAACA GACGAATCGC ATCAGGTCGT AGTGAGTCGG ATGACTGAAT TGCGTATTGC CGATCCGAAT ACCGGTATCA TTTTGGCCAA TCACAATATC CCCTACGGTG CAAAATTGTT CTTCCGCCAA GGTGATGCAG TCAAGAAAGG TGACAAAATC ATCGAATGGG ATCCGTTCAA TGCGGTCATC GTATCGGAAG TAGCAGGAAC ACTCTCTTTC GAAGGTGTAG TGGAGAATGT AACTTTCAAG ATGGAAAGCG ACGAGACGAC CGGTCTGAAA GAAAAGATTA TCATCGAATC CAAGGATAAG ACGATGGCTC CCTATGCTCG AATAATAGAC GAGAATGGAG AGATGCTCAA GAACTATAGT CTCCCGATGG GTGCCCACGT TGTGAAAGAC GATGGCGACA CAGTCAAAGT TGGCGAGATT TTGGTGAAGA TTCCTCGATC AGTGGGAAAA GCCGGTGACA TTACCGGTGG TTTGCCTCGT GTCACCGAGC TATTCGAAGC ACGAAATCCG TCGAATCCCG CGATCGTTTC CGAAATCGAT GGGGAAATCG GCTTTGGCAA GTTGAAACGA GGAAACCGTG AGATCACTGT TACCTCCAAG CTGGGTGAAG AGAAAAAATA TCTAATCCCC TTGTCCAAGC AGCTTCTTGT CCAAGAAAAC GACTTCGTTC GTGCAGGAAC ACCGCTTTCT GACGGAGCTA TTACTCCGGC TGATATTCTG GCAATCAAAG GTCCCACGGC AGTACAGGAG TACATCGTCA ATGAAGTACA AGACGTGTAT AGGCTTCAGG GTGTGAAGAT CAATGATAAG CACTTCGAAG TTATTGTTCG CCAGATGATG CGCAAGGTTG AAATTGTCGA TCCGGGTGAC ACCCTCTTCC TCGAACAGCA GGTAGTCGAT AAGTTCGAAG TAATGGAAGA GAACGATCGC ATCTGGGGTA AGAAGGTAGT TATTGATGCC GGAGATAGCC AAGTGCTGAA AGCCGGACAG ATTGTTACGG CACGCAAGCT CCGTGATGAG AACAGTATGC TCAAGCGTAA GGATCTCAAG ATCGTGAAAG TGCGCGATGC CAAGTCAGCT ACTGCCAGCC AGATACTCCA AGGTATTACC CGTGCGGCAC TGCAGACCAA GAGCTTCATG TCCGCGGCCT CTTTCCAAGA GACAACCAAG GTGCTGAATG AAGCAGCTAT CTGTGGTAAG ACTGACTACC TGGAAGGACT GAAGGAAAAC GTTATCTGCG GTCACCTCAT TCCGGCCGGT ACTGGTTTGC GCGATTACGA GAAGCTCGTC GTTATGCATC GTGACGATTA CGAAAAGGCG ACAGCCGAGC GTAAGAGTTT CCTTTCCGTG CCCACAGCCG AACCGGCAAT GGAAGAAGCA CCATCGGAAT AG
|
Protein sequence | MAFRKENKIK NNFSKIRITL ASPEEILENS FGEVLKPETI NYRTYKPERD GLFCERIFGP VKDFECHCGK YKRIRYRGIV CDRCGVEVTE KKVRRERMGH IHLVVPVAHI WYFRSLPNKI GYLLGLPTKK LDAIIYYERY VVIQPGVAEG LSQLDLLSEE EYLDKLDEIE RTHKGNQNLE DTNPDKFIAK IGAEAIYDLL CRVDLDSISY ELRDRANTDG SQQRKTEALK RLQVVESFRA SKGVNRPEWM VMKVIPVIPP DLRPLVPLDG GRFATSDLND LYRRVIIRNN RLKRLIEIKA PEVILRNEKR MLQEAVDSLF DNSRKSSAVK SDNNRPLKSL SDSLKGKQGR FRQNLLGKRV DYSARSVIVV GPELKMHECG LPKDMAAELY KPFIIRKLIE RGIVKTVKSA KKIVDRKEPV IWDILEYVMK GHPVLLNRAP TLHRLGIQAF QPKLIEGKAI QLHPLSCTAF NADFDGDQMA VHLPLSNEAI LEAQLLMLAS HNILNPANGA PITVPSQDMV LGLYYITKLR PNTKGHGLIF YGPEEATIAY NEGKVDIHAP IKVYVEDYEN GELVRRMVET SVGRLMVNEY VPKKVGYVNE VLGKKALRDI IGSVIKICGV ATTAKFLDDI KNLGYYMAFK GGLSFNLADV LIPDEKDQLI QEGYTAVEQI MQDYSMGFIT FNERYNQIID TWTHINGRLS NVLIKQLSSD NDGFNSVFMM MDSGARGSKE QIRQLSGMRG LMAKPQKSGA EGGQIIENPI LSNFKEGLSV LEYFISTHGA RKGLADTALK TADAGYLTRR LVDVSHDVII TEEDCGTLRG LLTTELKQNE DVVASLYERI LGRVSVHDII HPTTGDIIVR AGEEIREQAA QIIEDSPIEA VEIRSVLTCE SKKGVCAKCY GRNLATNRMV QRGEVVGVIA AQSIGEPGTQ LTLRTFHVGG IASNVATENS LLSKYDGILE FEELRAVDVT DESHQVVVSR MTELRIADPN TGIILANHNI PYGAKLFFRQ GDAVKKGDKI IEWDPFNAVI VSEVAGTLSF EGVVENVTFK MESDETTGLK EKIIIESKDK TMAPYARIID ENGEMLKNYS LPMGAHVVKD DGDTVKVGEI LVKIPRSVGK AGDITGGLPR VTELFEARNP SNPAIVSEID GEIGFGKLKR GNREITVTSK LGEEKKYLIP LSKQLLVQEN DFVRAGTPLS DGAITPADIL AIKGPTAVQE YIVNEVQDVY RLQGVKINDK HFEVIVRQMM RKVEIVDPGD TLFLEQQVVD KFEVMEENDR IWGKKVVIDA GDSQVLKAGQ IVTARKLRDE NSMLKRKDLK IVKVRDAKSA TASQILQGIT RAALQTKSFM SAASFQETTK VLNEAAICGK TDYLEGLKEN VICGHLIPAG TGLRDYEKLV VMHRDDYEKA TAERKSFLSV PTAEPAMEEA PSE
|
| |