Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PG0104 |
Symbol | topB-1 |
ID | 2552210 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Porphyromonas gingivalis W83 |
Kingdom | Bacteria |
Replicon accession | NC_002950 |
Strand | + |
Start bp | 125481 |
End bp | 127508 |
Gene Length | 2028 bp |
Protein Length | 675 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637148918 |
Product | DNA topoisomerase III |
Protein accession | NP_904451 |
Protein GI | 34539972 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0000375285 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATAGTCT GTATTGCCGA AAAGCCCAGT GTGGGGCGTG AGATCGCTGC TGTACTCGGT GCCACCAAAG CCTATAAAGG CTATATGGAG GGCAACGGTT ATCAGGTGAC ATGGACTTTC GGACATCTCT GTGCCCTCAA AGAACCTCAC GACTATGCAC CCGAATGGAA GCGATGGAGT ATCAGTTCTC TACCGATGAT ACCACTGCGA TTTGGCATCA AACTCATCGA TAGCGATAGT ATTCGGGAGC AATTCGGCAC CATCGAAAGG CTTGTCCATG AAGCGGATAT GGTCGTGAAC TGCGGTGATG CCGGACAGGA GGGAGAGCTG ATCCAGCGTT GGGTATTGCA GAAAACGGGC TGCACATGTC CCGTGCGGCG ACTTTGGATA TCTTCTCTTA CTGAGGAGTC TATCCGTGAA GGCTTTGCGA GGCTGCGCGA CAGCGAAGAA TTTCATTCCC TATATGAGGC CGGACTGGCT CGTGCCATAG GCGACTGGCT ATTGGGTATG AACGCTACGC GTCTTTATAC GCTCCGCTTC GGGGGCAACC GACAGGTACT TTCCATCGGA CGTGTACAGA CTCCGACTCT CGCCCTTATT GTCAGGAGAC AGCACGAGAT CGAGCACTTC ACCCCTGAAG TCTACTGGGA GGTGAAGACC ATCTACCGCG ATACGGTGTT CAATGCCACC AAGGGACGCT TTTCCTCGAT CGAGGATGCT CGTCGGGAAG TGGAGGTCGT AGCTGGCAGC CCATTTGCTG TTACCTCCGT GGCTACGAAG AAAGGTCGGG AGCTGCCGCC TCGACTTTTC GACCTCACCG GCCTACAGGT AGAATGCAAT AAGAGGTTTG CCATGACGGC CGATGCTACG CTACGCACCA TCCAATCGCT GTATGAGAAG AAGATCACCA CCTATCCGCG CGTGGATACC ACCTATCTGA GCGACGATGT ATTCGAAAAA GTGCCGAATA TCCTCCAAGG ACTCTCCGAC TATACCCTGC TCACAGCTCC ACTTCGAAGT AGCAAACTAA AAAAAAGCAA GAAGGTATTC GACAATAGCA AGATCACTGA CCACCATGCC ATCATTCCCA CCGGTCAGCC ATCCCATGGT ATGTCGGAGG ATGAGCGACG TGTATTCGAT CTGGTGGCCC GCCGATTTAT AGCCGTTTTC TATCCGGACT GCATATTCAG CCAGACCACG GTCTTGGGAC AAGCAGCTAA GGTAGAGTTC AAAACCACGG GGAAACAGAT ACTGGAGCCC GGCTGGCGCA CTGTCTTCAC CGATCCGCAG ACGGACGATG ATGGAGAGAA CAAGGACGAG GAGAAAAAAC TGCCAATATT CTCCGAGGGC GAAAGTGGAG TACACACCCC CGAGGTGCAG GAGAAAACGA CACAGCCGCC CAAATTCTAT ACCGAAGCTA CACTCCTGCG TGCCATGGAG ACGGCCGGCA AGTCGGTCAA GGACGAAGAG CTCCGCGATG CCCTCAAAGA AAATGGCATC GGCCGGCCGT CTACGCGAGC AGCCATCATT GAGACTCTCT TCAAGCGCAA CTACATTTAT AAAGAGAAGA AGAATCTCAA AGCTACTCCT ACGGGTATGT CTTTGATAGC GACGATCGAC TATGACCTGC TCAAGAGTGC CGAGCTGACC GGCCAATGGG AATACAAGCT TCGTCGCATC GAGCGAGGCG ACTATTCAGC AGCCGATTTT ATCAATGAAT TGAAAGTACT CCTGACCCAT CTGATTCCTA ATGTACTCAA GAGCAACTCT TCCGTACTCC TGTCAGAGCC GATACCTGCT GCTTCGCCTG CTCCCGGCAA AAAGAAAAAG GCTGATAAAC CCATGCAGAA GCAGCTCGAT CTCACCTGTC CGGTATGTGG CAAGGGAATC ATTGTCCGCG GTCGGGAAGC TTTCGGTTGC AATGCCTTTC GCGAAGGCTG CACCTTCCGA CTTCCATACT CTGAGTATCC TGCATCTCTG TCCGACAACG AATTGGTTGA TCTCCTTTCT TCGCAAAAAG GACACTAA
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Protein sequence | MIVCIAEKPS VGREIAAVLG ATKAYKGYME GNGYQVTWTF GHLCALKEPH DYAPEWKRWS ISSLPMIPLR FGIKLIDSDS IREQFGTIER LVHEADMVVN CGDAGQEGEL IQRWVLQKTG CTCPVRRLWI SSLTEESIRE GFARLRDSEE FHSLYEAGLA RAIGDWLLGM NATRLYTLRF GGNRQVLSIG RVQTPTLALI VRRQHEIEHF TPEVYWEVKT IYRDTVFNAT KGRFSSIEDA RREVEVVAGS PFAVTSVATK KGRELPPRLF DLTGLQVECN KRFAMTADAT LRTIQSLYEK KITTYPRVDT TYLSDDVFEK VPNILQGLSD YTLLTAPLRS SKLKKSKKVF DNSKITDHHA IIPTGQPSHG MSEDERRVFD LVARRFIAVF YPDCIFSQTT VLGQAAKVEF KTTGKQILEP GWRTVFTDPQ TDDDGENKDE EKKLPIFSEG ESGVHTPEVQ EKTTQPPKFY TEATLLRAME TAGKSVKDEE LRDALKENGI GRPSTRAAII ETLFKRNYIY KEKKNLKATP TGMSLIATID YDLLKSAELT GQWEYKLRRI ERGDYSAADF INELKVLLTH LIPNVLKSNS SVLLSEPIPA ASPAPGKKKK ADKPMQKQLD LTCPVCGKGI IVRGREAFGC NAFREGCTFR LPYSEYPASL SDNELVDLLS SQKGH
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