| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_3186 |
|---|
| Symbol | |
|---|
| ID | 7108100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011729 |
|---|
| Strand | + |
|---|
| Start bp | 3568937 |
|---|
| End bp | 3570421 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643481432 |
|---|
| Product | glycolate oxidase, subunit GlcD |
|---|
| Protein accession | YP_002378456 |
|---|
| Protein GI | 218440127 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 0.602747 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCTAC AAAACATCCT CAACCGAAGT AAAAACAAAT GGCAACCCAT CATTAAACAA
TTTGAAGCGA TCGTTGGTAA AGATGGAGTC GTACAACGCA AGGATGAATT GTTGACCTAT
GAATGTGATG GGATAACCGG ATATCGTCAA CGTCCTGCGG TTGTGGTTTT ACCTCGAACC
ACTGAACAAG TAGCCGCCGT CGTTAAAATT TGTCACGATC GAGATATTCC TTGGGTAGCT
AGAGGGGCAG GAACAGGGTT ATCAGGAGGG GCACTCCCCT TAGAAAATGG GGTTCTCATT
GTCACCGCCC GCATGAAACA GATTTTAAAG ATAGATTTAG AAAATCAACA AGTTGTGGTG
CAACCCGGCG TGATTAATAA TTGGGTGACT GGGGCGGTTA GCGGCGCAGG ATTTTATTAT
GCTCCCGATC CCTCAAGTCA GATTATTTGT TCGATTGGGG GTAATATAGC AGAAAACTCC
GGCGGGGTTC ATTGCCTTAA ATATGGGGTG ACGACGAATC ATGTTTTAGG GCTAAAAATA
GTCATTCCCG ATGGTTCAAT TATCGATGTT GGGGGAGTCA TTCCCGAAAT GCCGGGTTAT
GATTTAAGAG GTTTATTTGT CGGTTCTGAA GGAACATTAG GTATCGCTAC AGAAATTACT
TTACGTATTC TTAAAGTTCC TGAATCTATT TGTGTCCTGT TAGCCGATTT TACCTCTGTT
GAGGCTGCCG GGCAAGCCGT AGCCGATATT ATCGCTGCCG GTATCATTCC CGCCGGCATG
GAAATTATGG ATAATCTCAG TATTAATGCG GTGGAAGATG TAGTATCAAC GGGGTGTTAT
CCGAGGGATG CTGCTGCTGT TTTATTAGTA GAATTAGACG GACTGCAAGT GGAAGTTACC
GCCAATAAAC TCAGAGTAGG GGAAATTTGT CAACAGAATG GTGCAAGAAA TGTCACGACT
GCCAATGACC CCGAAACTCG CTTAAAATTT TGGAAAGGAC GAAAAGCCGC TTTTGCTGCC
GCCGGACAAA TGAGTCCGAA TTATTTTGTT CAAGATGGAG TAATTCCTCG GACTCGGTTA
GCGGACGTAC TTCGGGAAAT TAATCAACTC AGTGAAAAAT ATGGGTATCC TATCGCTAAT
GTATTTCATG CTGGAGATGG AAACCTTCAT CCTTTAATTT TGTATGATAA TAAAGTAGAG
GGAGCATGGG AAGAAGTCGA AGAATTAGGC GGTGAAATCC TTAAACTCTG TGTCCGTTAT
GGGGGTAGTC TATCAGGAGA ACATGGCATC GGTATTGACA AAAACTGTTA TATGCCCGAA
ATGTTTAACG AAATAGACTT AGAAACGATG GGTTATGTTC GAGACTGTTT TAATCCTAAA
GGATTAGCCA ACCCAGGTAA ACTTTTTCCG ACTCCTCGCA CTTGTGGAGA AGCGGCTAAT
GCTAAAAAAA TAGATAAAAA TATTGAAGGG GCAGAACTTT TTTAA
|
|---|
| Protein sequence | MLLQNILNRS KNKWQPIIKQ FEAIVGKDGV VQRKDELLTY ECDGITGYRQ RPAVVVLPRT
TEQVAAVVKI CHDRDIPWVA RGAGTGLSGG ALPLENGVLI VTARMKQILK IDLENQQVVV
QPGVINNWVT GAVSGAGFYY APDPSSQIIC SIGGNIAENS GGVHCLKYGV TTNHVLGLKI
VIPDGSIIDV GGVIPEMPGY DLRGLFVGSE GTLGIATEIT LRILKVPESI CVLLADFTSV
EAAGQAVADI IAAGIIPAGM EIMDNLSINA VEDVVSTGCY PRDAAAVLLV ELDGLQVEVT
ANKLRVGEIC QQNGARNVTT ANDPETRLKF WKGRKAAFAA AGQMSPNYFV QDGVIPRTRL
ADVLREINQL SEKYGYPIAN VFHAGDGNLH PLILYDNKVE GAWEEVEELG GEILKLCVRY
GGSLSGEHGI GIDKNCYMPE MFNEIDLETM GYVRDCFNPK GLANPGKLFP TPRTCGEAAN
AKKIDKNIEG AELF
|
|---|
| |