Gene PCC7424_0741 details

Gene Information

• Locus tag: PCC7424_0741
• Symbol: rpoB
• ID: 7109148
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cyanothece sp. PCC 7424
• Kingdom: Bacteria
• Replicon accession: NC_011729
• Strand: +
• Start bp: 821647
• End bp: 824937
• Gene Length: 3291 bp
• Protein Length: 1096 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 643479009
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_002376065
• Protein GI: 218437736
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR02013] DNA-directed RNA polymerase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 54
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGTAACC TAACTTACAA CCTTCTTCCG GATTTAATCT CAATTCAACG CTCTAGTTTT 
CGTTGGTTTC TCCAAGAAGG ATTAATTGAA GAACTCGATA GCTTTTCTCC GATTACAGAC 
TACACCGGAA AATTAGAACT TCACTTTTTA GGACAAGATT ATAAACTTAA AGAACCCAAA 
TATACAGTTG ATGAAGCTAA ACGACGGGAT AGCACCTATT CCGTTCAAAT GTATGTGCCG 
ACTCGTTTAA TTAACAAAGA AACGGGAAAT ATTAAAGAGC AAGAGGTCTT CATCGGGGAT 
TTACCCTTGA TGACAGAACG GGGAACATTT ATTATCAATG GAGCAGAGCG AGTCATCGTT 
AATCAAATTG TCCGCTCACC CGGAGTTTAT TATAAGTGTG AATATGATAA AAATGGTCGT 
CGCACTTATT CAGCCTCTTT GATTCCTAAC CGAGGAGCAT GGTTAAAATT TGAAACCGAT 
AAAAACGGTT TAGTTTGGGT CAGAATTGAT AAAACCCGCA AATTATCCGC CCAAGTTCTC 
CTCAAAGCGA TCGGGTTATC CGATAATGAA ATTCTTGATG CTCTACGTCA TCCGGATTTC 
TATCAAAAAA CTTTAGATAA AGAAGGCAAT CCCTCAGAAG AAGAGGCACT CTTAGAACTA 
TACCGCAAAC TACGACCCGG TGAACCCCCA ACAGTAAGCG GGGGACAATT ATTGTTAGAA 
TCGCGCTTTT TTGATAACAA ACGGTATGAT TTGGGACGAG TAGGGCGCTA TAAGCTCAAT 
AAAAAATTGC GCTTGAATGT GACGGATACC ACCAGAGTGT TAACCAGTGA GGATATTTTA 
TCGGCGATCG ATTATTTAAT CAATTTGGAA TTTGACATCG GTAGCACGGA TGATATTGAC 
CATTTGGGAA ATCGCCGGGT GCGCTCGGTG GGAGAATTGC TACAAAACCA GGTGAGAGTA 
GGTCTAAATC GCTTAGAAAG AATTATTCGG GAGCGGATGA CAGTCAGTGA GGCCGATAGT 
TTAACGCCGG CTTCGTTGGT GAATCCTAAG CCTCTGGTAG CAGCGATTAA AGAGTTTTTT 
GGGTCTTCCC AATTATCTCA GTTTATGGAT CAGACAAATC CCTTGGCAGA GTTGACCCAT 
AAACGCCGGT TATCGGCTTT AGGGCCAGGC GGGTTGACGC GAGAAAGAGC CGGGTTTGCG 
GTGCGGGATA TTCACCCCTC TCATCATGGA CGGATTTGTC CGGTAGAAAC CCCTGAAGGG 
CCCAATGCGG GGTTAATTGG TTCGTTGGCG ACTTATGCGC GAGTGAATCA GTATGGATTT 
ATTGAAACCC CTTATTATCG GGTAGAAAAT GGCCGAGCGC GTCGAGATTT AGAACCGGTT 
TATTTGACGG CGGATGAGGA AGATGAATTT CGGGTAGCTC CGGGAGATGT GGCGACGGAT 
GAAGAAGGCC ATATTATCGG GGAGTCGGTG CCGGTTCGCT ATCGTCACGA ATTTTCGACA 
ACAGAACCCC AACAGGTAGA TTATATTGCG GTTTCGCCGG TGCAGATTGT CTCAGTAGCC 
ACCTCTTTGA TTCCGTTCTT GGAACATGAT GATGCTAACC GGGCACTGAT GGGGTCGAAT 
ATGCAGCGTC AGGCAGTTCC TCTGTTGCGT CCGGAGCGGC CTTTAGTAGG AACGGGACTG 
GAGGCGCAAA CGGCGCGAGA TTCGGGGATG GTGATTGTTT CCCGGACTCA TGGGATTGTC 
ACTCATGTGG ATGCGACGAC GATTCGGGTT CAAGTTAAGG GTGAGGAGCG AGTGATTGAG 
TATGAGTTAC AGAAATATCA ACGCTCGAAC CAAGATACTT GTTTAAATCA GCGGCCTTTG 
GTCTATACCG GAGAAGAAGT TGTTCCCGGT CAGGTGTTGG CAGATGGGTC AGCCACCGAA 
GGGGGAGAAA TCGCCCTAGG ACAGAATATT TTGGTGGCTT ATATGCCTTG GGAAGGCTAT 
AACTATGAGG ACGCGATTTT GATCAGTGAA CGGCTGGTCT ATGATGATGT TTATACGAGT 
ATCCACGTAG AAAAGTATGA AATAGAAGCC CGTCAAACCA AGTTAGGGCC AGAGGAGATT 
ACGCGGGAAA TTCCTAATGT TGGGGAGGAT GCCTTAAGAA ATCTCGATGA GCGCGGAATT 
ATCCGTATTG GGGCTTGGGT CGAAGCCGGT GATATTTTGG TGGGTAAAGT GACTCCCAAA 
GGAGAATCAG ATCAACCCCC TGAAGAAAAG CTCCTACGGG CGATTTTCGG AGAAAAAGCC 
AGAGATGTGA GAGATAATTC CCTGCGTGTG CCCAATGGTG AAAAAGGACG GGTTGTGGAT 
GTGCGGGTGT TTACCCGTGA ACAGGGGGAT GAATTGCCTC CTGGGGCGAA TATGGTCGTT 
CGTGTCTATG TAGCCCAAAA GCGGAAAATC CAAGTAGGGG ATAAAATGGC GGGTCGTCAC 
GGAAATAAGG GGATTATTTC CCGAATTCTG CCGATTGAGG ATATGCCTTA TTTACCCGAT 
GGCCGTCCAG TTGATATTGT TCTCAATCCC TTGGGTGTGC CTTCCCGGAT GAATGTGGGT 
CAGGTGTTTG AGTGCCTTTT GGGATGGGCT GGAGAAAATT TGGGGGTACG CTTTAAAATT 
ACTCCTTTTG ATGAAATGTA TGGAGAGGAA GCCTCCCGGG AAACCGTGCA TGGACTTTTA 
GAGCAAGCTT CCCACCGACC GGGTAAAGAT TGGGTCTTTG ATACCGAAAA TCCAGGGAAA 
ATCATGGTTT ATGATGGGCG CACCGGTGAA CCGTTTGATC GACCGGTGAC AGTAGGTCAG 
GCTTATATGT TGAAGCTGGT TCACTTGGTA GATGATAAGA TTCACGCTCG TTCGACCGGC 
CCCTACTCTT TGGTGACTCA GCAACCCCTC GGCGGTAAGG CTCAACAGGG GGGTCAACGA 
TTCGGAGAGA TGGAGGTATG GGCATTAGAA GCTTATGGGG CGGCTTATAC CCTTCAGGAG 
TTATTAACGG TTAAGTCCGA TGATATGCAG GGACGTAATG AGGCGTTAAA TGCGATCGTT 
AAAGGTAAGC CGATTCCTCG TCCGGGTACG CCAGAGTCCT TTAAGGTATT GATGCGGGAG 
TTACAGTCCT TGGGGCTGGA TATTGCTGTG CATAAGGTAG AAACTCTAAC GGATGGAACT 
TCTAGAGATG TGGAGGTAGA TTTGATGGCG GATATGGGTC GTCGCACTCC AACCCGTCCG 
ACTTATGAAT CTCTGACGAC GGAAGATCTA GAGGAAGAAG TGAACGGTTA A 

 

Protein sequence

MSNLTYNLLP DLISIQRSSF RWFLQEGLIE ELDSFSPITD YTGKLELHFL GQDYKLKEPK 
YTVDEAKRRD STYSVQMYVP TRLINKETGN IKEQEVFIGD LPLMTERGTF IINGAERVIV 
NQIVRSPGVY YKCEYDKNGR RTYSASLIPN RGAWLKFETD KNGLVWVRID KTRKLSAQVL 
LKAIGLSDNE ILDALRHPDF YQKTLDKEGN PSEEEALLEL YRKLRPGEPP TVSGGQLLLE 
SRFFDNKRYD LGRVGRYKLN KKLRLNVTDT TRVLTSEDIL SAIDYLINLE FDIGSTDDID 
HLGNRRVRSV GELLQNQVRV GLNRLERIIR ERMTVSEADS LTPASLVNPK PLVAAIKEFF 
GSSQLSQFMD QTNPLAELTH KRRLSALGPG GLTRERAGFA VRDIHPSHHG RICPVETPEG 
PNAGLIGSLA TYARVNQYGF IETPYYRVEN GRARRDLEPV YLTADEEDEF RVAPGDVATD 
EEGHIIGESV PVRYRHEFST TEPQQVDYIA VSPVQIVSVA TSLIPFLEHD DANRALMGSN 
MQRQAVPLLR PERPLVGTGL EAQTARDSGM VIVSRTHGIV THVDATTIRV QVKGEERVIE 
YELQKYQRSN QDTCLNQRPL VYTGEEVVPG QVLADGSATE GGEIALGQNI LVAYMPWEGY 
NYEDAILISE RLVYDDVYTS IHVEKYEIEA RQTKLGPEEI TREIPNVGED ALRNLDERGI 
IRIGAWVEAG DILVGKVTPK GESDQPPEEK LLRAIFGEKA RDVRDNSLRV PNGEKGRVVD 
VRVFTREQGD ELPPGANMVV RVYVAQKRKI QVGDKMAGRH GNKGIISRIL PIEDMPYLPD 
GRPVDIVLNP LGVPSRMNVG QVFECLLGWA GENLGVRFKI TPFDEMYGEE ASRETVHGLL 
EQASHRPGKD WVFDTENPGK IMVYDGRTGE PFDRPVTVGQ AYMLKLVHLV DDKIHARSTG 
PYSLVTQQPL GGKAQQGGQR FGEMEVWALE AYGAAYTLQE LLTVKSDDMQ GRNEALNAIV 
KGKPIPRPGT PESFKVLMRE LQSLGLDIAV HKVETLTDGT SRDVEVDLMA DMGRRTPTRP 
TYESLTTEDL EEEVNG