Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4108 |
Symbol | |
ID | 8135106 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 4641134 |
End bp | 4643005 |
Gene Length | 1872 bp |
Protein Length | 623 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644867426 |
Product | ABC transporter related |
Protein accession | YP_003019659 |
Protein GI | 253690469 |
COG category | [R] General function prediction only |
COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.486076 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGGATA TCATGCACGC GGGTGCCGCC ACAGCACCCG GTAACGCCCC CAGACCTGTG CTGGAAATCG ACGACCTGAG CGTCAGCTTT AGCGGCCGTT CCGGCACGCA TCAGGCGCTA AAAGGCATTT CCTTTACCGT CAATAAAGGG GAAGTGGTCG CCGTGGTCGG CGAAAGTGGT TCAGGCAAGT CCGTGACGTC ACTCACCGTG ATGGGACTGC TGGCGGACTC TGCCAATATC GAACGCGGCG CGCTCCGTTT TACCGCACGC GACGGCCAGC AGCATGACCT GTTGAGCATG AAAGCGGAAG CACGCCGCAA GCTGCGCGGT CGCGATCTCG CCATGATTTT CCAGGAACCG ATGACTTCGC TCAATCCGGT GCTGAAAGTC GGCGACCAGC TCACAGAAGC GCTGCTTGAC CATAAGATCT GTGATGCCGC CAGCGCGGAC AAAAAAGCCC GTGAACTGCT GCACAAGGTC CGTATCGCGG ATGTCGACCG TGTGATGAAA AGCTACCCGC ACTCGCTGTC CGGCGGGATG CGCCAGCGCG TGATGATCGC ACAGGCGCTG GCCTGCGACC CACAACTGCT GATTGCCGAT GAACCGACCA CTGCGCTGGA CGTCACCGTG CAGGCGCGCA TTTTGCAAAT CCTGCGCGAC CTGCAACAGC AGAGCGACAT GGCAGTGCTG TTTATTACGC ACGATATGGG CGTAGTAGCG GAAATCGCCG ATCGCGTGGT GGTGATGTAT CGCGGCGAAA TCGTGGAGCA AGGCACCGTC GAACAGATTT TTGCCGCACC ACAGCACCCG TATACCCAGT CGCTGCTGGC CGCCGTACCC AAACTGGGCG ACATGCGCGA TAGCCTGTGG CCGAAACGTT TCCCACTGCT AGGGCAGGCT GCCGACCCGG AGAATATTGA ACAAGTCACC GCCCGCTATG ATGCCGAGCC GCTGTTAGAT ATTCGCGGGC TGCGGGTTTA TTACCCGATG CGCAGCGGGA TTTTGTCCAC CGTAACTCAC CACGTTCACG CGGTAGAACA GATCGATTTT AACGTCTGGC CGGGTGAAAC GCTGGCTATC GTTGGGGAAA GCGGCTGTGG CAAATCCACC ACCGGACGCG CTCTGCTGCG TCTGGTACAG AGCGAAGCCG AAAGCATCCA TTTTCAGGGC AACGAAATTT CCCAGATGAA AGAGCGTGAT TTCCAGCCGC TGCGTCGGGA AATGCAGATG GTGTTTCAAG ACCCGTATGC CTCACTCAAC CCGCGCCTGA CGGTCGGCTT TACCATCGCC GAACCGCTGC TGCTCCACGG ATTGGTGAAA TCACTGGAAG AAGCGACACC ACAGGTGCAG GCGCTGCTAA AAAGCGTCGG CTTGCTGCCT GAGCACGCGC GCCGTTATCC GCACGAGTTT TCCGGCGGGC AGCGTCAGCG TATCGCGATT GCTCGCGCGA TGGCGCTACA GCCGCAGGTC ATCATTGCTG ACGAAGCCGT TTCAGCGCTG GATGTGTCGA TTCAGGCACA AGTCGTCAAC CTGATGATGG ATCTCCAGAA GAAAACCGGC GTGTCGTGGA TTTTCATCTC GCACGATATG GCCGTTGTTG AGCGCATCGC CAACCGCGTC GCGGTGATGT ACCTCGGCCA GATTGTGGAG ATCGGCCCGC GCCAGTCGGT GTTTAACGAT CCGCAGCATC CGTATACCCG CCGCCTGTTG GCCTCAGTTC CGATTGCCGA TCCAACGCGT CGCGGTACAC GCCAGTTTGA CGACAGCGAA ATCCCCTCTC CTTTGCGTAA AGCAGGTGAG ACCGTCGCCA AAACGCGCTA CCGAGAGGTC GCGCCGCAGC ACTGGGTCGC CGACAACGAA TCGGCAGCCT GA
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Protein sequence | MTDIMHAGAA TAPGNAPRPV LEIDDLSVSF SGRSGTHQAL KGISFTVNKG EVVAVVGESG SGKSVTSLTV MGLLADSANI ERGALRFTAR DGQQHDLLSM KAEARRKLRG RDLAMIFQEP MTSLNPVLKV GDQLTEALLD HKICDAASAD KKARELLHKV RIADVDRVMK SYPHSLSGGM RQRVMIAQAL ACDPQLLIAD EPTTALDVTV QARILQILRD LQQQSDMAVL FITHDMGVVA EIADRVVVMY RGEIVEQGTV EQIFAAPQHP YTQSLLAAVP KLGDMRDSLW PKRFPLLGQA ADPENIEQVT ARYDAEPLLD IRGLRVYYPM RSGILSTVTH HVHAVEQIDF NVWPGETLAI VGESGCGKST TGRALLRLVQ SEAESIHFQG NEISQMKERD FQPLRREMQM VFQDPYASLN PRLTVGFTIA EPLLLHGLVK SLEEATPQVQ ALLKSVGLLP EHARRYPHEF SGGQRQRIAI ARAMALQPQV IIADEAVSAL DVSIQAQVVN LMMDLQKKTG VSWIFISHDM AVVERIANRV AVMYLGQIVE IGPRQSVFND PQHPYTRRLL ASVPIADPTR RGTRQFDDSE IPSPLRKAGE TVAKTRYREV APQHWVADNE SAA
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