| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_4088 |
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| Symbol | rfaD |
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| ID | 8135086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 4623909 |
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| End bp | 4624841 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644867406 |
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| Product | ADP-L-glycero-D-mannoheptose-6-epimerase |
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| Protein accession | YP_003019639 |
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| Protein GI | 253690449 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | [TIGR02197] ADP-L-glycero-D-manno-heptose-6-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATTATCG TTACTGGCGG TGCCGGTTTT ATCGGCAGCA ATATCGTAAA ATCTCTGAAT
GACATCGGCT ATCGGGACAT TCTGGTTGTC GATAACCTGA AAGATGGCAC CAAATTCGTC
AATCTGGTCG ATCTGGATAT CGCAGATTAC ATGGATAAGG AAGACTTTAT CGCCAGCATC
GTTGCAGGCG ACGATCTGGG GGATATCGAT GCCGTATTCC ATGAAGGTGC CTGCTCTTCC
ACCACCGAGT GGGATGGCAA ATACATGATG GATAACAACT ATCAGTATTC CAAAGATGTG
CTGCACTATT GCCTCGATCG CAACATTCCG TTCCTGTATG CCTCTTCCGC CGCAACCTAC
GGTGGTCGCA ACGATAACTT TATCGAAGAA CGTCAGTACG AGCAGCCGCT GAACGTCTAT
GGCTACTCCA AATTCCTGTT CGATCAATAT GTGCGTGAAA TTCTCCCAGA AGCAGAATCG
CAGATCTGCG GTTTCCGCTA TTTCAACGTC TATGGACCGC GTGAAGGCCA CAAAGGCAGC
ATGGCAAGCG TCGCGTTTCA TCTGAACAAC CAGATCAATC AGGGTGAAAA TCCGAAGCTG
TTCTCCGGTA GCGAGAACTT CAAGCGTGAC TTCGTCTACG TCGGTGATGT CGCAGCCGTC
AACCTGTGGT TCTGGCAAAA CGGTGTTTCC GGCATCTTCA ACTGCGGTAC TGGCCGTGCC
GAATCCTTCC AGGCTGTCGC CGACGCTACG CTTGCGTTCC ACAAGAAAGG CGGAGTGGAA
TACATCGAGT TCCCCGAGAA GCTGAAAGGT CGCTATCAGG CCTACACTCA GGCTGACCTC
ACCAACTTGC GTGCCGCAGG TTATGACAAG CCGTTCAAAA CCGTCGCCGA AGGCGTGGCG
GAATATATGG CCTGGCTGAA CCGTACCGTT TAA
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| Protein sequence | MIIVTGGAGF IGSNIVKSLN DIGYRDILVV DNLKDGTKFV NLVDLDIADY MDKEDFIASI
VAGDDLGDID AVFHEGACSS TTEWDGKYMM DNNYQYSKDV LHYCLDRNIP FLYASSAATY
GGRNDNFIEE RQYEQPLNVY GYSKFLFDQY VREILPEAES QICGFRYFNV YGPREGHKGS
MASVAFHLNN QINQGENPKL FSGSENFKRD FVYVGDVAAV NLWFWQNGVS GIFNCGTGRA
ESFQAVADAT LAFHKKGGVE YIEFPEKLKG RYQAYTQADL TNLRAAGYDK PFKTVAEGVA
EYMAWLNRTV
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