Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4011 |
Symbol | rho |
ID | 8135002 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4526874 |
End bp | 4528226 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644867322 |
Product | transcription termination factor Rho |
Protein accession | YP_003019562 |
Protein GI | 253690372 |
COG category | [K] Transcription |
COG ID | [COG1158] Transcription termination factor |
TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGTTGAAG GCTGTTATAG AGGCACGGAT GATCCTGCCA TACCATTCAC GTTAATAGTT CGAGATTTAC CCCGAGTTAA AGAACCCACC ACTATGAATC TTACCGAATT AAAGAATACG CCAGTTTCTG AGTTAATTGC TCTTGGCGAA AATATGGGTC TGGAAAACCA GGCTCGCATG CGTAAACAGG ATATTATCTT CGCTATTCTG AAACAGCATG CCAAAAGCGG CGAGGATATT TTCGGCGATG GTGTGCTGGA GATATTGCAG GATGGCTTCG GCTTCCTCCG CTCAGCAGAC AGCTCCTACC TCGCAGGCCC CGATGATATC TACGTTTCTC CCAGCCAAAT CCGCCGTTTT AACCTCCGCA CTGGTGACAC CATTTCTGGC AAGATTCGTC CGCCGAAAGA AGGTGAACGC TACTTTGCGC TGCTGAAAGT TAACGAAGTC AACTACGACA AACCTGAAAA CGCCCGCAAC AAGATCCTGT TCGAAAACCT CACGCCACTG CATGCAAACT CTCGTCTGCG TATGGAACGC GGTAATGGGT CGACAGAAGA TTTGACGGCG CGCGTGCTGG ATCTGGCTTC GCCGATTGGC CGTGGTCAAC GTGGTCTGAT CGTTGCACCG CCTAAAGCAG GTAAAACCAT GCTGCTGCAG AACATTGCGC AGAGCATTGC TTACAACCAT CCTGACTGCG TACTGATGGT TCTGCTGATT GACGAACGTC CGGAAGAAGT TACCGAGATG CAGCGTCTGG TGAAAGGTGA AGTGGTTGCG TCAACGTTCG ACGAACCGGC TTCTCGTCAC GTTCAGGTTG CCGAAATGGT GATCGAAAAA GCGAAGCGTC TGGTTGAGCA TAAGAAAGAC GTTATCATCC TTCTGGACTC TATTACCCGT CTGGCGCGTG CCTACAACAC CGTTGTTCCT GCCTCGGGCA AAGTGTTGAC TGGTGGTGTG GATGCCAACG CCCTGCATCG TCCGAAGCGT TTCTTCGGTG CGGCACGTAA CGTTGAGGAA GGCGGTAGCC TGACCATTAT CGCCACCGCG CTGGTTGATA CTGGCTCCAA GATGGATGAA GTGATTTACG AAGAGTTTAA AGGTACAGGT AACATGGAAC TGCACCTGGC GCGTAAAATC GCAGAAAAAC GCGTCTTCCC AGCGATTGAC TACAACCGCT CCGGTACGCG TAAAGAAGAA TTGCTTACCA CCTCTGAAGA ATTGCAGAAG ATGTGGATTC TACGCAAGAT CATCCACCCA ATGGGCGAGA TCGACGCGAT GGAATTCCTG ATCAACAAGT TGGCGATGAC AAAAACCAAC GATGAATTCT TCGATATGAT GAAACGTTCA TAA
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Protein sequence | MVEGCYRGTD DPAIPFTLIV RDLPRVKEPT TMNLTELKNT PVSELIALGE NMGLENQARM RKQDIIFAIL KQHAKSGEDI FGDGVLEILQ DGFGFLRSAD SSYLAGPDDI YVSPSQIRRF NLRTGDTISG KIRPPKEGER YFALLKVNEV NYDKPENARN KILFENLTPL HANSRLRMER GNGSTEDLTA RVLDLASPIG RGQRGLIVAP PKAGKTMLLQ NIAQSIAYNH PDCVLMVLLI DERPEEVTEM QRLVKGEVVA STFDEPASRH VQVAEMVIEK AKRLVEHKKD VIILLDSITR LARAYNTVVP ASGKVLTGGV DANALHRPKR FFGAARNVEE GGSLTIIATA LVDTGSKMDE VIYEEFKGTG NMELHLARKI AEKRVFPAID YNRSGTRKEE LLTTSEELQK MWILRKIIHP MGEIDAMEFL INKLAMTKTN DEFFDMMKRS
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