Gene PC1_3980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3980 
SymbolhemC 
ID8134967 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp4491087 
End bp4492028 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content57% 
IMG OID644867287 
Productporphobilinogen deaminase 
Protein accessionYP_003019531 
Protein GI253690341 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0181] Porphobilinogen deaminase 
TIGRFAM ID[TIGR00212] porphobilinogen deaminase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000129404 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAGCCA ATATTATTAG AATTGCCACC CGACAAAGCC CGCTCGCCCT GTGGCAAGCA 
CGATATGTTC AGCAGTGTCT GAATCACCTC TACCCGGATT TACACGTGGA GCTGGTGCCG
ATGGTGACCC GCGGCGACAT TATCCTGGAT ACGCCACTGG CAAAGGTCGG CGGTAAGGGA
TTGTTTGTTA AAGAGCTGGA ATTGGCGCTG CTTGAAGGGC GCGCTGATAT TGCCGTCCAT
TCCATGAAAG ATGTGCCCGT CGAATTCCCG GATGGCCTCG GCCTGACTAC CATTTGCGAA
CGCGATGACC CGCGCGACGC ATTCGTTTCC AACCGTTACG ACAGCCTCGA ACAATTACCG
GAAGGCAGCT GTGTCGGCAC ATCCAGCCTG CGTCGCCAGT GTCAGCTGCG CGCCCGACGC
CCTGATCTAG TGATTCGTGA TTTGCGCGGC AATGTCGGAA CGCGTCTGGC AAAACTGGAC
AACGGCGAGT ATGACGCCAT TATCCTTGCC GTCGCGGGTT TGAAACGCCT CGGCCTTGAA
GAACGCATCC GCTGTGCGCT GAGCCCGGAA GAATCTCTAC CTGCCGTCGG ACAAGGTGCT
ATCGGCATCG AATGCCGTTT AAATGACGAT CGTATTCGCC AACTCCTTGC CCCACTCAAT
CACCCCGCGA CCGCTGCCCG CGTCCAGGCT GAACGCGCCA TGAATGTGCG CCTTGAAGGT
GGCTGTCAGG TGCCGATTGG CAGCTATGCC GAACTGGAAG GCGATACACT GTGGTTACGT
GCGCTGGTTG GCGCCCCGGA CGGTAGCCAA ATGATCGTCG GTGAACGTAG AGGAAACGTC
TCCGACGCCG AACAGATCGG CATCGCACTG GCGGAAGAGC TGTTAGCAAA AGGGGCCAGC
GCCATCCTTC AGGCCGTTTA TCACGAGTCG AGCTCATCAT GA
 
Protein sequence
MLANIIRIAT RQSPLALWQA RYVQQCLNHL YPDLHVELVP MVTRGDIILD TPLAKVGGKG 
LFVKELELAL LEGRADIAVH SMKDVPVEFP DGLGLTTICE RDDPRDAFVS NRYDSLEQLP
EGSCVGTSSL RRQCQLRARR PDLVIRDLRG NVGTRLAKLD NGEYDAIILA VAGLKRLGLE
ERIRCALSPE ESLPAVGQGA IGIECRLNDD RIRQLLAPLN HPATAARVQA ERAMNVRLEG
GCQVPIGSYA ELEGDTLWLR ALVGAPDGSQ MIVGERRGNV SDAEQIGIAL AEELLAKGAS
AILQAVYHES SSS