Gene PC1_3962 details

Gene Information

• Locus tag: PC1_3962
• Symbol: rhtB
• ID: 8134949
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 4471935
• End bp: 4472555
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 644867269
• Product: homoserine/homoserine lactone efflux protein
• Protein accession: YP_003019513
• Protein GI: 253690323
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1280] Putative threonine efflux protein
• TIGRFAM ID: [TIGR00949] The Resistance to Homoserine/Threonine (RhtB) Family protein

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.149154
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACATTGG ACTGGTGGTT AACCTATTTA CTCACAACGC TTATTCTCAG CCTGTCGCCC 
GGCTCGGGCG CTATCAACAC CATGAGTACC GGCATTAGCC ACGGCTATCG CGGCGCGGCG 
GCTTCGATCT GTGGTTTGCA GGTCGGGCTG GCGATTCATA TCGTGCTGGT CGGCATCGGG 
CTAGGCGCGC TGCTTAACCA GTCGGTACTG GCTTTCGATA TGCTGAAATG GCTGGGCGCG 
GCTTATCTGA TTTGGCTGGG GATTCAGCAG TGGCGCGCCG CAGGCGCACT AGACCTTCAG 
GCGATCGCCA GCGCGATGCC GCGTCGTAGA CTGTTTAAAC GTGCGGTGCT GGTGAATCTG 
ACCAACCCGA AAAGCATCGT TTTTCTGGCG GCGCTGTTCC CACAGTTCAT TATCCCCCAC 
CAGCCGCAGG CCGCTCAGTA TCTGGTATTG GGCGTCACCA CCGTTGTGGT CGATATTATC 
GTGATGATTG GCTATGCCAC GCTGGCTACG CGGATCGCCG GGTGGCTGAA AGGCCCACGG 
CAGATGAAGA CACTCAACCG GATATTCGGT TCACTGTTCG TGCTGGTTGG CGCGTTACTT 
GCCACCGCGA GAAAAGCCTG A 

 

Protein sequence

MTLDWWLTYL LTTLILSLSP GSGAINTMST GISHGYRGAA ASICGLQVGL AIHIVLVGIG 
LGALLNQSVL AFDMLKWLGA AYLIWLGIQQ WRAAGALDLQ AIASAMPRRR LFKRAVLVNL 
TNPKSIVFLA ALFPQFIIPH QPQAAQYLVL GVTTVVVDII VMIGYATLAT RIAGWLKGPR 
QMKTLNRIFG SLFVLVGALL ATARKA