Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3923 |
Symbol | |
ID | 8134910 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4417818 |
End bp | 4420934 |
Gene Length | 3117 bp |
Protein Length | 1038 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644867230 |
Product | aminoglycoside/multidrug efflux system |
Protein accession | YP_003019474 |
Protein GI | 253690284 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.72261 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGAATT TTTTTGTCGA CCGTCCTATT TTTGCGTGGG TGCTGGCTAT CCTTCTCAGC CTATGCGGTA TGTTGGCTAT CAAGTCATTG CCTCTGGAAC AGTATCCCGA TCTGGCGCCG CCCAGCGTGC GGATCACGGC GAGCTACCCA GGCGCATCGG CACAGACGCT GGAAAATACC GTCACACAGG TTATTGAGCA GAGCATGACC GGGCTGGATA ACCTGATGTA CATGTCCTCA GACAGCAGTA ATACCGGGCA AGCCCGTGTC ATGCTGACCT TCGAGGCGGG TACCAATCCC GATGAAGCTC GCCAGCAGGT GCAAAACCAG CTTCAATCCG CTATCCGCAA GCTGCCGCAG GAAGTCCAGC AGCAGGGCGT CACCGTGAGT AAAACGGGCG ATACCAATAT TCTGATGGTC GCGTTTGTCT CTACCGATGG CAGTATGGAC AAGCAGGATA TCGCCGATTA TGTCGCGACG AATATTCAGG AACCAATTAG CCGTATCAGC GGGGTGGGCG AGGTTTCTGC ATATGGATCG CAGTATGCGA TGCGTATCTG GCTGGATCCG GCCAAACTGA TGGATTATGC GCTGACCACC AGCGATGTGG TTCGAGCCAT CGAATCGCAG AACAGTCAGG TTTCGGTAGG GCAAGTCGGC GGTGTACCGT CGGTGGATAA TCAGGCGCTT AACGCGACGA TCAACGCACA ATCCCTGTTA CAGACGCCAC AGCAGTTCCG TGATATCACG CTGCGCGTCA ATCAGGACGG CTCCGCTGTG ACGTTAGCTA ACGTTGCAGA AGTCGAACTG GGTGCCGAAC GCTACGATTT TCTCAGCCGT TTCAACGGCC AGTCCGCTTC TGGTCTGGGG GTGACGCTGG CGTCTGGCGC GAATGAACTG GAAACCGACA AGCGCGTCAG AGAACGTATC GATGAGCTAT CACGTTATTT TCCGCACGGG ATGGAAGCCA AAATCGCTTT CGAAACCTCC CCCTTTGTTA AAGCTTCTAT CACCGACGTG GTGAAAACCC TGTTTGAAGC GGTGCTGCTG GTCTTTCTGG TGATGTACCT ATTCTTGCAG AATTTCCGCG CCACGCTGAT TCCTACGATT GCGGTGCCGG TAGTGTTACT CGGTACGTTT GCCGTGCTGT ACGCCTGTGG ATTCAGTCTG AACACCCTGA CAATGTTCGC GATGGTGCTG GCGATTGGCC TGCTGGTGGA CGATGCCATC GTGGTGGTGG AAAACGTAGA GCGGGTGATG AGCGAAGAGG GGCTCTCGCC ACGGGAAGCG ACGCGAAAAT CGATGGGACA GGTGCAGGGG GCGCTGGTGG GGATTGCGCT GGTGCTGTCC GCCGTGTTTG TGCCGATGGC CTTCTTTGGC GGCACCACGG GGGCGATTTA CCGTCAGTTC TCCATCACGA TTGTGACATC AATGATTCTG TCGGTGCTGG TGGCGATGAT TCTGACGCCT GCGCTGTGCG CGACGTTGCT CAAGCCGCTT GCTAAGGGGC AACATCACGG CCGCAAAGGG TTCTTCGGCT GGTTTAACCG GAGCTTTACC CGCACGTCGC TGAAGTATGA GCGCGGCGTC GGCAAGATAT TGATGAGCAG CGGGCGCTGG CTGCTGCTGT ATATGGGCAT CATCGGCGTT ATGGCTTTCC TGTTTTTTCG GCTGCCGACC TCGTTTCTGC CGCAGGAAGA TCGGGGCGTG TTCACGACTC AAGTGCAGCT ACCGCCGGGT TCGACGCAGC AGCAGACCTT ACAGGTGGTC AACAAGATCG AGCAGTATTA TCTCACGCAG GAAAAAGACA CGGTGACGTC CGTGTTTTCC ACCATTGGCT CGGGGCCGGG CGGAAACGGG CAAAACGTGG CGCGGCTGTT TATACGCCTT AAAGACTGGA ACGAACGCAC CACACCGGAG AGCAGCTCGT TTGCCGTGAT CGAACGCGCG ACCAAAGCCT TTCGTCATAT TCAGGAAGCG CGCGTGTTTG CCAGTAGCCC GCCGTCAATT AACGGGCTGG GGAGTGCCGC CGGTTTCGCC ATGCGCTTAC AGGATCGCGG GGGACTGGGA CACGATGCGC TGATGGCCGC ACGGGATCAG CTGTTAAATA TGGCTGATAG CAATCCCGAA CTGACGCGCG TGCGTCACAA CGGTCTGGAT GACAGCTCGC AGTTGCGGAT TCATATCGAT CAGCGCAAAG CACAGGCGCT GGGTGTGTCG GTGGATGACA TTAACAGCAC GCTGAAAACT GGCTGGGGCT CGACCTATGT GAATGACTTT CTCGATCGTG GCCGCGTGAA GAAAGTCTAT GTTCAGGCGG CGGCGAAGTT CCGTATGCTG CCGGACGACA TCAGTAAATG GTATGTGCGC AACAACCGTG GCGGCATGGT GCCGTTCAGT GCGTTTGCGC AAACCGTCTG GGAAACCGGT TCGCCGCGTC TTGAGCGTTA CAACGGTTAT TCCTCGCTGG AAATTGTCGG CGAGGCGATG CCGGGCGTCA GTACCGGTAC GGCCATGACG GTCATGGAGT CTCTGGTGGC GAAGCTGCCA GAAGGCTTTG GCTTAGAGTG GACCGGCATG TCGTTGCAGG AGCGATTGAG CGGGGCGCAG GCTCCGGCGC TGTATGCGAT TTCTCTGCTG GTGGTGTTTC TGTGTCTGGC CGCGCTGTAT GAAAGCTGGA CGGTGCCGTT TTCCGTCATG CTGGTGGTGC CGATGGGCGT GCTGGGGGCG CTGGTGGCAA CCTGGGCACG CGGGCTGGAA AACGATGTCT ATTTTCAGGT TGGGCTATTG ACCGTGGTTG GGCTATCGGC GAAGAACGCC ATTCTGATTG TGGAATTCGC CAACGAGATG AACCAGAAAG GGAAGGATCT GGTTGAGGCC ACGCTGGAGG CTTCCCGCCA GCGGCTGCGG CCGATATTGA TGACGTCACT GGCATTTATT TTCGGTGTTC TGCCGATGGC GACAAGCAGC GGCGCGGGTT CGGCCAGTCA GCATGCAGTG GGAACGGGCG TGATCGGCGG TATGCTGGCT GCGACTTTCC TCGCCATCTT CTTCGTGCCG CTGTTCTTTG TCGTCGTGCG CCGCCGCTTT CCGTTAAAGG AGAAGACGCT GGAGTAG
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Protein sequence | MANFFVDRPI FAWVLAILLS LCGMLAIKSL PLEQYPDLAP PSVRITASYP GASAQTLENT VTQVIEQSMT GLDNLMYMSS DSSNTGQARV MLTFEAGTNP DEARQQVQNQ LQSAIRKLPQ EVQQQGVTVS KTGDTNILMV AFVSTDGSMD KQDIADYVAT NIQEPISRIS GVGEVSAYGS QYAMRIWLDP AKLMDYALTT SDVVRAIESQ NSQVSVGQVG GVPSVDNQAL NATINAQSLL QTPQQFRDIT LRVNQDGSAV TLANVAEVEL GAERYDFLSR FNGQSASGLG VTLASGANEL ETDKRVRERI DELSRYFPHG MEAKIAFETS PFVKASITDV VKTLFEAVLL VFLVMYLFLQ NFRATLIPTI AVPVVLLGTF AVLYACGFSL NTLTMFAMVL AIGLLVDDAI VVVENVERVM SEEGLSPREA TRKSMGQVQG ALVGIALVLS AVFVPMAFFG GTTGAIYRQF SITIVTSMIL SVLVAMILTP ALCATLLKPL AKGQHHGRKG FFGWFNRSFT RTSLKYERGV GKILMSSGRW LLLYMGIIGV MAFLFFRLPT SFLPQEDRGV FTTQVQLPPG STQQQTLQVV NKIEQYYLTQ EKDTVTSVFS TIGSGPGGNG QNVARLFIRL KDWNERTTPE SSSFAVIERA TKAFRHIQEA RVFASSPPSI NGLGSAAGFA MRLQDRGGLG HDALMAARDQ LLNMADSNPE LTRVRHNGLD DSSQLRIHID QRKAQALGVS VDDINSTLKT GWGSTYVNDF LDRGRVKKVY VQAAAKFRML PDDISKWYVR NNRGGMVPFS AFAQTVWETG SPRLERYNGY SSLEIVGEAM PGVSTGTAMT VMESLVAKLP EGFGLEWTGM SLQERLSGAQ APALYAISLL VVFLCLAALY ESWTVPFSVM LVVPMGVLGA LVATWARGLE NDVYFQVGLL TVVGLSAKNA ILIVEFANEM NQKGKDLVEA TLEASRQRLR PILMTSLAFI FGVLPMATSS GAGSASQHAV GTGVIGGMLA ATFLAIFFVP LFFVVVRRRF PLKEKTLE
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