Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3890 |
Symbol | nudE |
ID | 8134877 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4376685 |
End bp | 4377242 |
Gene Length | 558 bp |
Protein Length | 185 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644867197 |
Product | ADP-ribose diphosphatase NudE |
Protein accession | YP_003019441 |
Protein GI | 253690251 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG1051] ADP-ribose pyrophosphatase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTCATA ACCTGCAAAA ACCTAAAATC CTCAAAGTAG AAACGGTAGC GCGTTCGCGC CTGTTCAATG TGGAATCCGT CGATCTTGAA TTCAGCAACG GGGTTCGTCG GGTTTATGAA CGGATGCGTT CCAGCGGTCG GCAGGCGGTG ATGGTTGTCC CGGTCATTGA TGATGAACTG TTGTTGATCC GTGAATACGC TGTCGGCATT GAGGAATACG AATTAGGGTT CCCCAAAGGG CTGATCGACC CCGGTGAAAC GGTCTTTGAA GCGGCTAACC GCGAACTAAT GGAAGAAGTC GGCTTTGGGG CGGAACAGCT GGAGTTGCTG GCGACATTAA CGATGGCACC TTCCTATTTT TCCAGCCAGA TGAATATTGT GGTGGCGCGC GGGCTGTATC CGCAAAGCCT GGAAGGCGAT GAACCAGAGC CCATGCCGCA AGTCCGCTGG CCTGTGGATA ACATGATGTC GCTGCTGCAA GAGCCGGATT TCCGTGAAGC GCGTAATGTC AGCGCGCTGT TTCTGGCTCA CGACTGGCTA CGTCGTACAC CCCGCTAA
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Protein sequence | MSHNLQKPKI LKVETVARSR LFNVESVDLE FSNGVRRVYE RMRSSGRQAV MVVPVIDDEL LLIREYAVGI EEYELGFPKG LIDPGETVFE AANRELMEEV GFGAEQLELL ATLTMAPSYF SSQMNIVVAR GLYPQSLEGD EPEPMPQVRW PVDNMMSLLQ EPDFREARNV SALFLAHDWL RRTPR
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