| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3883 |
|---|
| Symbol | aroK |
|---|
| ID | 8134870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4369330 |
|---|
| End bp | 4369851 |
|---|
| Gene Length | 522 bp |
|---|
| Protein Length | 173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644867190 |
|---|
| Product | shikimate kinase I |
|---|
| Protein accession | YP_003019434 |
|---|
| Protein GI | 253690244 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0703] Shikimate kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000719849 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAGA AACGCAATAT CTTTCTGGTT GGGCCTATGG GTGCCGGCAA AAGCACTATT
GGCCGTCAGT TAGCTCAGCA ACTCAATATG GAGTTTTTCG ACTCCGATCA AGAAATTGAG
CGACGCACTG GGGCTGATGT GGGCTGGGTA TTCGATGTGG AAGGCGAAGA AGGCTTCCGC
GATCGTGAAG AGAAAGTCAT TAATGAATTG ACGGAAAAAC AAGGCATCGT ACTGGCGACA
GGCGGTGGTT CAGTCAAGTC ACGTGAGACG CGTAACCGTC TTTCCGCGCG CGGCGTTGTC
GTTTATTTGG AAACGACGAT CGAGAAACAG CTGGCCCGCA CGCAGCGTGA TAAGAAGCGT
CCGTTACTTC AGGTTGAAAC CCCTCCACGT GAAGTATTGG AAGCGCTGGC GAAAGAGCGG
AACCCGCTTT ATGAAGAAAT CGCTGACGTT ACCATTCGGA CTGACGAGCA AAGTGCCAAG
GTCGTTGCTA ACCAGATTAT CAATATGCTG GAAAGTAACT AA
|
|---|
| Protein sequence | MAEKRNIFLV GPMGAGKSTI GRQLAQQLNM EFFDSDQEIE RRTGADVGWV FDVEGEEGFR
DREEKVINEL TEKQGIVLAT GGGSVKSRET RNRLSARGVV VYLETTIEKQ LARTQRDKKR
PLLQVETPPR EVLEALAKER NPLYEEIADV TIRTDEQSAK VVANQIINML ESN
|
|---|
| |