Gene PC1_3882 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3882 
SymbolaroB 
ID8134869 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp4368192 
End bp4369277 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content54% 
IMG OID644867189 
Product3-dehydroquinate synthase 
Protein accessionYP_003019433 
Protein GI253690243 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0337] 3-dehydroquinate synthetase 
TIGRFAM ID[TIGR01357] 3-dehydroquinate synthase 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.0261483 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAGAA TTACCGTAAC ACTTGGGGAA CGTAGTTATC CCATTACGAT AGCCGCCGGA 
TTATTTGATG ATTCGGCTTC TTTTATGCCG TTAAAAGCGG GGGAGCAGGC CATGCTGGTG 
ACCAACCAGA CCTTGGCCCC TCTGTACCTT GACCGCGTTC GTGGTGTGTT GGAAAACAGC 
GGCGTACATG TCGATCAGGT TATCTTACCT GATGGCGAGC AGTACAAATC GCTCACCGTA 
TTGGATCAGG TTTTTAGCGC TCTGTTGGCG AAACCACATG GTCGTGATAC GACGATTGTT 
GCCTTGGGTG GCGGTGTTAT CGGCGATTTA GCCGGTTTTG CCGCGGCCAG TTATCAGCGC 
GGCGTCCGGT TTATTCAGGT GCCGACAACG CTGTTATCGC AGGTAGATTC CTCCGTCGGT 
GGTAAAACCG CCGTCAATCA CCCGTTGGGT AAAAACATGA TCGGGGCGTT CTACCAGCCC 
GTATCGGTTG TGATCGATCT GGATTGCCTG AAATCTTTAC CGGCACGGGA ATTGTCATCC 
GGGCTGGCGG AAGTCATCAA GTACGGCATT ATTCTGGATC GCGATTTCTT TCTTTGGCTC 
GAAGAAAACA TTGAAGCCGT GCGTGAATTA CAGCCTGACG CGCTGGCTTA CTGCATTCGA 
CGCTGCTGTG AAATTAAAGC GGCAGTGGTC GCGGCAGATG AACGCGAAAG TGGTATGCGT 
GCTCTGCTCA ATTTGGGCCA TACTTACGGT CATGCTATCG AAGCGGAAAT GGGCTACGGC 
AACTGGCTTC ATGGCGAAGC GGTTGCGGCA GGCATGGTGA TGGCTGCACA TACGGCACGT 
CGCCTTGGGC AGTTCTCTGC TGAGGATGTT GAACGAGTCA AATCTCTGCT GGTTCGTGCT 
GGCCTGCCAG TGAACGGCCC GACGCAAATG GCGCCCGAAG CTTATCTTCC TCATATGATG 
CGCGACAAGA AAGTACTGGC GGGTGAGTTA CGTCTGGTGC TGCCAACGGC AATTGGCCAG 
TCAGAAGTCC GTGGCGGCGT AGCGCATGAC ATGGTGCTGG CCTCAATAGC TGATTGCCTG 
GCCTGA
 
Protein sequence
MERITVTLGE RSYPITIAAG LFDDSASFMP LKAGEQAMLV TNQTLAPLYL DRVRGVLENS 
GVHVDQVILP DGEQYKSLTV LDQVFSALLA KPHGRDTTIV ALGGGVIGDL AGFAAASYQR 
GVRFIQVPTT LLSQVDSSVG GKTAVNHPLG KNMIGAFYQP VSVVIDLDCL KSLPARELSS 
GLAEVIKYGI ILDRDFFLWL EENIEAVREL QPDALAYCIR RCCEIKAAVV AADERESGMR 
ALLNLGHTYG HAIEAEMGYG NWLHGEAVAA GMVMAAHTAR RLGQFSAEDV ERVKSLLVRA 
GLPVNGPTQM APEAYLPHMM RDKKVLAGEL RLVLPTAIGQ SEVRGGVAHD MVLASIADCL 
A