Gene PC1_3807 details

Gene Information

• Locus tag: PC1_3807
• Symbol: rplF
• ID: 8134794
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: -
• Start bp: 4300665
• End bp: 4301198
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 644867114
• Product: 50S ribosomal protein L6
• Protein accession: YP_003019358
• Protein GI: 253690168
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000515876
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCGTG TTGCAAAAGC ACCCGTCGTC ATTCCTGCCG GCGTAGAGGT AAAACTCAAC 
GGTCAGGATA TTTCGATTAA GGGTAAAAAC GGCGAGCTGA GTCGTAAGAT CCACGATGCT 
GTTGAAGTGA AACAAGCTGA CAACGCTCTG ACTTTCGCTC CGCGCGAAGG TTTCGTTGAC 
GGATGGGCCC AGGCGGGCAC CACTCGCGCT CTGTTGAACG CAATGGTTAT CGGTGTTACC 
GAAGGCTTCA CCAAGAAGCT GCAACTGGTT GGTGTTGGTT ACCGCGCTGC TGTTAAAGGC 
AATGTGGTTA ACCTGTCTCT TGGGTTCTCT CACCCAGTAG ATCACGCACT GCCGGCAGGT 
ATTACTGCAG AATGCCCAAG CCAAACTGAA ATCGTACTGA AAGGTGCTGA TAAGCAGGTT 
ATTGGTCAGG TCGCTGCGGA ATTACGCGCC TACCGTCGTC CTGAGCCTTA CAAAGGCAAG 
GGTGTCCGTT ACGCCGACGA AGTCGTGCGT ACCAAAGAGG CTAAGAAGAA GTAA 

 

Protein sequence

MSRVAKAPVV IPAGVEVKLN GQDISIKGKN GELSRKIHDA VEVKQADNAL TFAPREGFVD 
GWAQAGTTRA LLNAMVIGVT EGFTKKLQLV GVGYRAAVKG NVVNLSLGFS HPVDHALPAG 
ITAECPSQTE IVLKGADKQV IGQVAAELRA YRRPEPYKGK GVRYADEVVR TKEAKKK