Gene PC1_3652 details

Gene Information

• Locus tag: PC1_3652
• Symbol: lspA
• ID: 8134632
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: -
• Start bp: 4119954
• End bp: 4120466
• Gene Length: 513 bp
• Protein Length: 170 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 644866952
• Product: lipoprotein signal peptidase
• Protein accession: YP_003019203
• Protein GI: 253690013
• COG category: [M] Cell wall/membrane/envelope biogenesis; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0597] Lipoprotein signal peptidase
• TIGRFAM ID: [TIGR00077] lipoprotein signal peptidase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAAAA TCTGTTCGAG TGGACTGCGC TGGCTCTGGC TGGCGATACT GGTTTTAGTT 
ATCGATCTTG GCAGCAAGCA GTGGATCCTT GCCCACTTTG CGCTGGGGGA TACGGTGCCA 
GTGATGCCTT CTCTGAATCT GCATTACGCC CGTAACTACG GCGCAGCATT CAGCTTCCTG 
GCGGATAAAG GCGGCTGGCA ACGCTGGTTC TTTGCCGGTA TCGCGATTGC TATCGTGGTT 
GCGCTGCTGG TGATGATGTA TCGTGGCAGC GTCAAACACA GGCTGAATAA TATTGCGTAT 
TCGCTGATTA TCGGTGGCGC ATTGGGCAAT CTGTTTGACC GCACATGGCA TGGATTTGTT 
GTCGACTTCA TCGATTTCTA TGTCGGTGAC TGGCACTTTG CCACGTTTAA CCTGGCCGAT 
ACCGCCATCT GTATTGGTGC TGCGCTCATC GTACTGGAAG GGTTTTTCAG TACGCATGAT 
GATACTGATA CCGTTAAGCA AAAGGGTCAC TGA 

 

Protein sequence

MNKICSSGLR WLWLAILVLV IDLGSKQWIL AHFALGDTVP VMPSLNLHYA RNYGAAFSFL 
ADKGGWQRWF FAGIAIAIVV ALLVMMYRGS VKHRLNNIAY SLIIGGALGN LFDRTWHGFV 
VDFIDFYVGD WHFATFNLAD TAICIGAALI VLEGFFSTHD DTDTVKQKGH