Gene PC1_3646 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3646 
Symbol 
ID8134626 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp4111708 
End bp4112400 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content51% 
IMG OID644866946 
ProductHelix-turn-helix type 11 domain protein 
Protein accessionYP_003019197 
Protein GI253690007 
COG category[K] Transcription 
COG ID[COG2378] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGTCCA GAACGCAGCG TTTGCTTGAG CTTTTACAGA TATTACGCCA TCACCGGTTT 
CCCGTAACAG GGGCGTATTT GGCGGAAAAG TTAAGTGTGA GCCAGAGAAC GGTCTATCGT 
GATATTGCCA CGCTACAGTT GCAGGGAGCG CATATTGAGG GAGAGGCGGG ATTAGGTTAT 
ATCCTGCGCC CAGGGTTCAT TCTGCCCCCT CTGATGTTTT CAGAAGAGGA AATTGAAGCA 
TTAGTGTTGG GCTCGCGCTG GGTCGTCCGA AGAACAGATG AGCGTTTGGC GGGGGCAGCC 
CGTAATGCGT TGATGAAGAT TGCCGCGGTA TTACCACCAG AGTTGCGTAA CGCGCTTGAT 
TCTTCAGGAC TATTAGTGGG TAAGGCGGAA TTTACTCCCG CTGTTGCTAT CGACTTATCA 
GCCTTACGTC ATGCTATTCG GGCAGAACGG CGCACGGAGA TTGCTTATTG TGACCTTCAG 
GGCAATGAGT CTCTCCGAAT TATCTGGCCG TTTGCATTGG GATTTTTCGA TCAAACGCAT 
GTGATTGCCG CCTGGTGCGA ACGCCGTCAG CAGTTTCGTC ACTTCAGGGC TGAACGCATC 
CGTAGTATGA CGGTGTTGGA GCAGCGTTAT CCTCGTCGTC GCCAGCAGTT ATTAAAAGAA 
TGGCATGAAA AAGAGGACAT TCCTCAGCAG TAA
 
Protein sequence
MMSRTQRLLE LLQILRHHRF PVTGAYLAEK LSVSQRTVYR DIATLQLQGA HIEGEAGLGY 
ILRPGFILPP LMFSEEEIEA LVLGSRWVVR RTDERLAGAA RNALMKIAAV LPPELRNALD 
SSGLLVGKAE FTPAVAIDLS ALRHAIRAER RTEIAYCDLQ GNESLRIIWP FALGFFDQTH 
VIAAWCERRQ QFRHFRAERI RSMTVLEQRY PRRRQQLLKE WHEKEDIPQQ