| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3626 |
|---|
| Symbol | |
|---|
| ID | 8134606 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4089384 |
|---|
| End bp | 4090154 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644866926 |
|---|
| Product | SNARE associated Golgi protein |
|---|
| Protein accession | YP_003019177 |
|---|
| Protein GI | 253689987 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0586] Uncharacterized membrane-associated protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCGT GGCTGGATCA TCTGGTTACT CAATCGCTAG CGTATTCACT GATCGCCGTC
ATGCTGGTTG CCTTTCTGGA ATCTTTGGCT CTGGTAGGGC TGTTGTTGCC GGGGACGGTG
ATGATGGCAA CGCTGGGGGC GCTGATCGGC AGCGGACAGA TGGGGCTTTA CCCGGCGTGG
GCGGCCGGGA TTATCGGGTG CCTGCTCGGG GACTGGATTT CCTATTTTAT TGGCATGCGC
TTTAAAGCTC CTCTGCATAA CTGGTCTTTC CTGAAAAAGT ACCAGTCGTT ACTGAGTAAA
ACCGAATATG CGCTGTATCA GCACCCGATG CCGACGATAC TGATCGGGCG CTTTGTTGGC
CCGACGCGCC CGCTCATTCC GATGGTGGCG GGGATGCTGG GGCTACCGCC TTATAAATTT
GCCGTACCGA ATATCATCGG CTGCCTGCTG TGGCCACCGG CCTATTTCTT ACCCGGTATT
TTGGCTGGCG TTGCGATTGA TATTCCCGCC GGGACGAATA GTGCAGGGTT TAAGTGGCTG
CTGCTGATAA CGGTCATTGT GGTGTGGGTT GCAGGTTGGC TAAATTGGCG CTGGTGGCGC
AGTGATAAGC GTAAGCATCG TGACTGGTTT AGCAGAAACC TGCCGCTCAG ACGTCTGCGC
TGGGTCGCAC CCGTGGTGTC CGTGGCGGCG GTGGTATCGC TGGTCATGCT GATTCAGCAC
CCGCTGATGC CGGTTTATCG TCATCTGCTA TGGCAGGTGT TGAACGGGTG A
|
|---|
| Protein sequence | MEAWLDHLVT QSLAYSLIAV MLVAFLESLA LVGLLLPGTV MMATLGALIG SGQMGLYPAW
AAGIIGCLLG DWISYFIGMR FKAPLHNWSF LKKYQSLLSK TEYALYQHPM PTILIGRFVG
PTRPLIPMVA GMLGLPPYKF AVPNIIGCLL WPPAYFLPGI LAGVAIDIPA GTNSAGFKWL
LLITVIVVWV AGWLNWRWWR SDKRKHRDWF SRNLPLRRLR WVAPVVSVAA VVSLVMLIQH
PLMPVYRHLL WQVLNG
|
|---|
| |