| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3621 |
|---|
| Symbol | thiQ |
|---|
| ID | 8134601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 4084495 |
|---|
| End bp | 4085205 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644866921 |
|---|
| Product | thiamine transporter ATP-binding subunit |
|---|
| Protein accession | YP_003019172 |
|---|
| Protein GI | 253689982 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG3840] ABC-type thiamine transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01277] thiamine ABC transporter, ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.802335 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCGC TTGAGAAATT AACCTACTTC TATCAGCACT TGCCCATGCG TTTTGATTTT
CACGTCAAAC CGGGCGAACG CATCGCCATC CTCGGCCCCA GCGGCGCAGG GAAAAGTACG
CTGCTGAATC TGATTGCCGG TTTCCTGATG GCTGACAGCG GCGAATTACG GCTTAACGGT
GAACCTCACC GCGAGACGCC TCCCGCTAAA CGGCCAGTTT CGATTCTATT TCAGGAAAAT
AACCTGTTTC CACATCTGAC GATTGGGCAA AACATCGCGC TGGGATTGCA TCCCGGCCTG
CGGCTCAGTG CCGCACAGCG TGAAACGCTA CGACAGATCG CCGATCGGGT CGGTCTGGCG
GATCTTCTGG ATCGTCTACC GTCACAGGTT TCCGGCGGGC AGCGCCAGCG CGCGGCACTG
GCACGCTGTC TGGTGCGCCA CCAGCCTATT CTGCTGCTGG ATGAGCCGTT CTCAGCGCTC
GATCCGGCGC TGCGTCAGGA GATGCTCGAT CTGGTTGAGA GCGTGTGTCA GGAGCGTGAG
TTCACACTGC TGATGGTGTC TCACAATCTG GATGATGCCA TGCGGATCGC AAAGCGTACG
GTGCTGATCG TGGACGGACA GATTTATTAT GATGGGCCGA CCCAGGCGCT ACAGGATGGC
AGCGCCGATG CGGCTGCCAT CCTGGGAATT TCACGCCCGT CTTTGGATTG A
|
|---|
| Protein sequence | MIALEKLTYF YQHLPMRFDF HVKPGERIAI LGPSGAGKST LLNLIAGFLM ADSGELRLNG
EPHRETPPAK RPVSILFQEN NLFPHLTIGQ NIALGLHPGL RLSAAQRETL RQIADRVGLA
DLLDRLPSQV SGGQRQRAAL ARCLVRHQPI LLLDEPFSAL DPALRQEMLD LVESVCQERE
FTLLMVSHNL DDAMRIAKRT VLIVDGQIYY DGPTQALQDG SADAAAILGI SRPSLD
|
|---|
| |