Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3538 |
Symbol | |
ID | 8134518 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3985878 |
End bp | 3986762 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644866839 |
Product | dihydrodipicolinate synthetase |
Protein accession | YP_003019090 |
Protein GI | 253689900 |
COG category | [E] Amino acid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.423247 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAAAA ATATTACCGG CGTCCTGACC GCCATCGTCA CGCCGTTTGA TAACCAGGGC GAATTTAACC CCGCTGCCAT GCGTCTTCAG GTTCAGCGCC AGATGCGCTA TGGCAACGGT ATCTTTTGTA ACGGCACCAA CGGTGAGTTT TTCGTACTGC ACACCGATGA AAAAGTCGCC GTCACTGAAA CCTGCGTTGA TGAAGTCGCC GGAAAAGTGC CGGTTGTCGG CCACATCGGT GAAATCTCCA CGCGGGAAAC CATCAAGCTC GGCAAGCGCA TCGCCGCGCT GGGTGTTGAT GCCGTTTCGG TCATCACCCC GTATTTCATC CCACTCAAAC AGGAAGAACT GATCGCCCAC TACACCGCCG TCGCCGATGC GCTGACTGTG CCGGTGTTTC TCTACAACAT TCCTGCACGC ACGGGGAATA CGCTGGCGCC GGAAACCGTC CGCACGCTGG CGGATCACCC GAACATCATC GGCATCAAAG ACAGCGCAGG CAGCTATGAA AGCCTGAGCG GCTATGTGCA AGCGGTGAAA GGTGTACAGG GCTTTAACGT ATTGAATGGC CCAGACTCGC TCATTCACCA GGGCTTTGTT GACGGCTGCT CCGCCTGTAT TTCCGGGCTG GCTAACGTGG CACCGGAACC GATCAGCCAG ATTTGGCATC GTTTCCACGC CGGTGACATT GAAGGCTCGC GTCAGGCACA AGAACAGGTT GCCGAGTTGC GTAAGACACT GTATGCCATC GCATTCTCAC CTGCTGTGGT GAAAAAAGCG CTGGCGATCA TGGGTGAAGA TGTCGGCGTC AGCCGCTATC CGATCCAGTT TTCCGCACAG GATGAAGACA ACATCCGCAA CATACTTAGT CAATTCTCGC AGTAA
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Protein sequence | MSKNITGVLT AIVTPFDNQG EFNPAAMRLQ VQRQMRYGNG IFCNGTNGEF FVLHTDEKVA VTETCVDEVA GKVPVVGHIG EISTRETIKL GKRIAALGVD AVSVITPYFI PLKQEELIAH YTAVADALTV PVFLYNIPAR TGNTLAPETV RTLADHPNII GIKDSAGSYE SLSGYVQAVK GVQGFNVLNG PDSLIHQGFV DGCSACISGL ANVAPEPISQ IWHRFHAGDI EGSRQAQEQV AELRKTLYAI AFSPAVVKKA LAIMGEDVGV SRYPIQFSAQ DEDNIRNILS QFSQ
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