Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3534 |
Symbol | |
ID | 8134514 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 3981173 |
End bp | 3981946 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644866835 |
Product | transcriptional regulator, DeoR family |
Protein accession | YP_003019086 |
Protein GI | 253689896 |
COG category | [G] Carbohydrate transport and metabolism [K] Transcription |
COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGGGG ATAAAGTAAG AGGCCAGAGC CGTCTTGATC AGATTATGGA TTATCTGAAA AGCCATAATC TGGTGACGGT AGATGAGCTG GTGTCTGTGA TCGACGCTTC CCCAGCGACG ATCCGCCGTG ATTTGATCAA GCTGGATGAA CAGGGCGTGA TTAGTCGCAG TCATGGCGGC GTGACGCTCA ATCGTTTTAT TCCTTCCCAG CCGACCACGA ATGAAAAATT ACAGCGCAGT CTTCAGGAGA AGCAGGCGAT AGCTCGCTAT GCCGCGACGC TGGTTAAACC GGGTAGCGCG GTAGTGCTGG ATGCGGGAAC GACCATGCTG GAGTTGGCGC GTCACCTGAC GCATTTGCCG CTGCGCGTGA TTACCGCCGA TTTACAAATT GCGCTGTTCC TGTCTGAGTT CAAACAAATT GAAGTGACGA TTATCGGTGG GCGTATTGAT GACAGTAGCC AGTCTTGTAT TGGTGAACAC GGCCGCCGTC TGTTACGCAG CATTTATCCC GATATCGCGT TTATCAGCTG TAACTCGTGG AGTCTGGATA AAGGGATCAC TACGCCAACG GAAGAAAAAG CGGGTGTGAA ACAGGATCTC GGCGTGAATG CCAGCCGCCG GATACTGCTG GCGGACAGCA GTAAATACGG CGCCTATTCG CTGTTCTGCG TGACGCCGCT GTCTGAACTG ACCGATATCA TCACCGATAG TGCGCTCGCG CCCGAGGTGC AGGAGCAACT GAAAGGTAAA ACGTTCAGTC TGACGCTGGT GTAA
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Protein sequence | MSGDKVRGQS RLDQIMDYLK SHNLVTVDEL VSVIDASPAT IRRDLIKLDE QGVISRSHGG VTLNRFIPSQ PTTNEKLQRS LQEKQAIARY AATLVKPGSA VVLDAGTTML ELARHLTHLP LRVITADLQI ALFLSEFKQI EVTIIGGRID DSSQSCIGEH GRRLLRSIYP DIAFISCNSW SLDKGITTPT EEKAGVKQDL GVNASRRILL ADSSKYGAYS LFCVTPLSEL TDIITDSALA PEVQEQLKGK TFSLTLV
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