| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3474 |
|---|
| Symbol | |
|---|
| ID | 8134454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3919000 |
|---|
| End bp | 3919905 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644866775 |
|---|
| Product | ABC transporter periplasmic substrate-binding protein |
|---|
| Protein accession | YP_003019026 |
|---|
| Protein GI | 253689836 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1840] ABC-type Fe3+ transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.586797 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTCCA CTATCATTCA TGCCCCCACG GGGGACGGCT CAAAGGCCAC GCTCAGAGCC
TACAGCTCTT TTGAACCCTA TGAACTTGCC GATTATCTGC AAGCGCTCGC GCATCATATG
CCTGATGTGG CGATCCACAT TGAAAGAATG CCGACGGCAG CGCTGACGGC AAGACTGGCT
CAGGAACAGT ACGCTCCTCA GGTGGATATG ATTCTGGGGT GGGCGGATAC CGCCTCGCGC
ACCCTTGATT TAAGCGGTGT GCTATTTGCT CCGGGCGCTG ACGCCGATGG ATACCTGCGC
ATCACCGGGT TTTCAACCGC GATCGTTGTC GATCCTGCTG TCCTCTCCGA AACGGGCGTG
GACATCGCAT CATGGGTCGA TCTTACCCAG TCAGCCCTTC AGGGGCGGAT TGCGTTTCCC
GATCCGGCTG TATCGGGCGC AGGGTTTCTG GCTCTGGCGA CGATTCTGCA ATTCTATGGC
GAAACCGAGG GCTGGGCGAT CCTCGCTGAT ATTTATCGCA ATGCACACAT CAGGCCGCCT
TCCGCGTGGG AACCCGCCCG GCTGACCGGA GAAGGGCAGA TCGCGGCTGG CGTAACGGTA
AAAATAGCGG CCTCAAATCG GCAGCGGGAA CGTCCCTCTC TGCACATCGT TGAGCCACAG
GATGCGATCG GCATTGAATC CGAGGTTTTT GCTGGCTTTA CCACGACCCG TCACCCTTCG
CTGGTCACTC AGGCACTGGA ATGGCTCAGG TCAGAAGAAG CGGAAGGGAT TTATGCCAGC
TACAACAAAA TTATTCTCGG AAAACCGGAT AGCCGGCTAT TTGTTATTGA TGCTGAAAAC
GCGGTAAAAA ACCGAACCCG CTGGTTGTCC CAGCTTGAAT TCATTGCAAA CGGTAATCAC
CTATGA
|
|---|
| Protein sequence | MASTIIHAPT GDGSKATLRA YSSFEPYELA DYLQALAHHM PDVAIHIERM PTAALTARLA
QEQYAPQVDM ILGWADTASR TLDLSGVLFA PGADADGYLR ITGFSTAIVV DPAVLSETGV
DIASWVDLTQ SALQGRIAFP DPAVSGAGFL ALATILQFYG ETEGWAILAD IYRNAHIRPP
SAWEPARLTG EGQIAAGVTV KIAASNRQRE RPSLHIVEPQ DAIGIESEVF AGFTTTRHPS
LVTQALEWLR SEEAEGIYAS YNKIILGKPD SRLFVIDAEN AVKNRTRWLS QLEFIANGNH
L
|
|---|
| |