Gene PC1_3451 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3451 
Symbol 
ID8134431 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp3898114 
End bp3898935 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content57% 
IMG OID644866752 
Productpyrroline-5-carboxylate reductase 
Protein accessionYP_003019003 
Protein GI253689813 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0345] Pyrroline-5-carboxylate reductase 
TIGRFAM ID[TIGR00112] pyrroline-5-carboxylate reductase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00381464 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGCAAC GTAAAATAGC GTTTATTGGT GCCGGAAACA TGGCGCAGGC CATTATCGCC 
GGATTAGTCA ACGGCGGTTA CCCCGCTCAA CACATCAGCG TCTGCGCACC TTCGGGTAAG
AACCGCGATG CGCTGGCGGC ACAATACGGC GTGATCAGCA GCGCAGACAA TGTCCGCTGC
GCTCAGGAAG CGGATGTCAT TGTTCTGGCC GTCAAACCGC AGATGATGGC AACAGTTTGC
GAACCGCTGC ATGAGCAAGT CAACTTCTCC GGTAAACTGG TACTCTCGAT TGCGGCAGGC
ATCAGTATCG CGCGTTTTCA GGCACTGCTG GGAGAACCGC TGAATATCGT ACGAATTATG
CCAAATACAC CGTCTCTGGT CGGAAAAGGC ATGAGTGGGA TGTACGCCCC CGCCTCCGTC
AGTCAGGCTG ATAAAGACTT CACCGCACAG CTGATGCAGA GCGTCGGTAA AATTTGCTGG
GTGGATAGCG AATCAGGCAT TAACGGCGTG ATCGCCGCAG CGGGCAGCGC ACCGGCCTAT
TTCTTCCTGT TTATGGAAGC CATGCAGCAG GAAGCCATCC GTCAGGGGTT CAGCCAGGAA
ACGGCTCGCC TGCTGGTGCA GCAGGCCGCA TCGGGCGCCG CTGCGCTGGT TGAAGCCAAC
CCCGATACGG CGCTGTCAAC GCTGCGGGAG AATGTCACCT CCAAGGGCGG CACCACGGCA
GAAGCCCTGC GGGTATTTAA CGAACAGCAG TTGACGCAAA CCGTGGCTGA GGCCATGCAG
GCGGCGATTG CTCGCGCACA GGAAATGGAA ACGCTTTTTT AA
 
Protein sequence
MQQRKIAFIG AGNMAQAIIA GLVNGGYPAQ HISVCAPSGK NRDALAAQYG VISSADNVRC 
AQEADVIVLA VKPQMMATVC EPLHEQVNFS GKLVLSIAAG ISIARFQALL GEPLNIVRIM
PNTPSLVGKG MSGMYAPASV SQADKDFTAQ LMQSVGKICW VDSESGINGV IAAAGSAPAY
FFLFMEAMQQ EAIRQGFSQE TARLLVQQAA SGAAALVEAN PDTALSTLRE NVTSKGGTTA
EALRVFNEQQ LTQTVAEAMQ AAIARAQEME TLF