Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3451 |
Symbol | |
ID | 8134431 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3898114 |
End bp | 3898935 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644866752 |
Product | pyrroline-5-carboxylate reductase |
Protein accession | YP_003019003 |
Protein GI | 253689813 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0345] Pyrroline-5-carboxylate reductase |
TIGRFAM ID | [TIGR00112] pyrroline-5-carboxylate reductase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00381464 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAGCAAC GTAAAATAGC GTTTATTGGT GCCGGAAACA TGGCGCAGGC CATTATCGCC GGATTAGTCA ACGGCGGTTA CCCCGCTCAA CACATCAGCG TCTGCGCACC TTCGGGTAAG AACCGCGATG CGCTGGCGGC ACAATACGGC GTGATCAGCA GCGCAGACAA TGTCCGCTGC GCTCAGGAAG CGGATGTCAT TGTTCTGGCC GTCAAACCGC AGATGATGGC AACAGTTTGC GAACCGCTGC ATGAGCAAGT CAACTTCTCC GGTAAACTGG TACTCTCGAT TGCGGCAGGC ATCAGTATCG CGCGTTTTCA GGCACTGCTG GGAGAACCGC TGAATATCGT ACGAATTATG CCAAATACAC CGTCTCTGGT CGGAAAAGGC ATGAGTGGGA TGTACGCCCC CGCCTCCGTC AGTCAGGCTG ATAAAGACTT CACCGCACAG CTGATGCAGA GCGTCGGTAA AATTTGCTGG GTGGATAGCG AATCAGGCAT TAACGGCGTG ATCGCCGCAG CGGGCAGCGC ACCGGCCTAT TTCTTCCTGT TTATGGAAGC CATGCAGCAG GAAGCCATCC GTCAGGGGTT CAGCCAGGAA ACGGCTCGCC TGCTGGTGCA GCAGGCCGCA TCGGGCGCCG CTGCGCTGGT TGAAGCCAAC CCCGATACGG CGCTGTCAAC GCTGCGGGAG AATGTCACCT CCAAGGGCGG CACCACGGCA GAAGCCCTGC GGGTATTTAA CGAACAGCAG TTGACGCAAA CCGTGGCTGA GGCCATGCAG GCGGCGATTG CTCGCGCACA GGAAATGGAA ACGCTTTTTT AA
|
Protein sequence | MQQRKIAFIG AGNMAQAIIA GLVNGGYPAQ HISVCAPSGK NRDALAAQYG VISSADNVRC AQEADVIVLA VKPQMMATVC EPLHEQVNFS GKLVLSIAAG ISIARFQALL GEPLNIVRIM PNTPSLVGKG MSGMYAPASV SQADKDFTAQ LMQSVGKICW VDSESGINGV IAAAGSAPAY FFLFMEAMQQ EAIRQGFSQE TARLLVQQAA SGAAALVEAN PDTALSTLRE NVTSKGGTTA EALRVFNEQQ LTQTVAEAMQ AAIARAQEME TLF
|
| |