| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3430 |
|---|
| Symbol | |
|---|
| ID | 8134410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3877448 |
|---|
| End bp | 3878161 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644866731 |
|---|
| Product | Opacity-associated protein A |
|---|
| Protein accession | YP_003018982 |
|---|
| Protein GI | 253689792 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3061] Cell envelope opacity-associated protein A |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000719849 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAGAA TTGCGCCCAG GAAGCGGAAA ACCACCTGGG ATTATCAAAC GCTAGTACGC
TTCTGCCAGC GAATTATTCA GCGGCAGCCC TCAAATGCTG TAGCCGTAGA AAACGACGAG
GAACGCGAAG ATCAGGAACG CTTGCCTCCT GCTTCCCCGC GTGAGCGCCT TGGTGCCATG
CTGCAAAAAA TCTGGCATCT GCCCGATGGC TACCACTGGA TGGAACCGTT GCCGCTCCTC
CACCGTCGCT GGATTTTAAT CGCCATCGCC CTGCTATTGG TCGTATTGCT CTGGCCTTAC
AGCGCACAAC ATCCACAACC TATCCGCACT ACACCAGTTC CTCTTACCCA AGCAGATAAT
CAGGAGGCGA TGCAGGCCGT GATTATTGAA AACCAGCCTT CAATGTCACA GCAGCAGCCT
GCTACTACGC CACCTCCGAC GCCGTCATCA GCACCATGGC GGCAATATGA GATTGCATCA
GGGCAAACGC TGGCTCAGCT CTTTCGCGAT AACAATCTGC CCGTCAGCGA TGTATTCGCG
ATGGCTCAGG TGGAAGGCAG GGATAAGCCG CTCAGCAATT TACGAGCAGG TCAGGAAGTT
AAATTACAGC TGAATGCGCA AGGCATGGTC GCCGAGCTGG AAATCGAAAC CACGGCGAAC
CAGACAATTC GCTTCACCCG CGGTGCAGAT GGCGCCTTTA CGCGTACTCG CTAA
|
|---|
| Protein sequence | MGRIAPRKRK TTWDYQTLVR FCQRIIQRQP SNAVAVENDE EREDQERLPP ASPRERLGAM
LQKIWHLPDG YHWMEPLPLL HRRWILIAIA LLLVVLLWPY SAQHPQPIRT TPVPLTQADN
QEAMQAVIIE NQPSMSQQQP ATTPPPTPSS APWRQYEIAS GQTLAQLFRD NNLPVSDVFA
MAQVEGRDKP LSNLRAGQEV KLQLNAQGMV AELEIETTAN QTIRFTRGAD GAFTRTR
|
|---|
| |