Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3390 |
Symbol | rumA |
ID | 8134370 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 3825595 |
End bp | 3826944 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644866691 |
Product | 23S rRNA 5-methyluridine methyltransferase |
Protein accession | YP_003018942 |
Protein GI | 253689752 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.02988 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCGCAAT TCTACTCTCC AAACCGGCGT GTGACGACCC GGAAAGCGAT TCCTGCTAAG AACCTCACTG TTACGGTCAC GTCACTTGAC CCGTTTGGGC AGGGAGTGGC GCGTCACGAA GGTAAGACGG TGTTTGTCAC GGGTGTACTG CCGGGAGAGC AGGCTGAGGT CCAACTGACG GAAGATAAAC GTCAGTTTTC GCATGCAAAG CTTAAACGCC TGCTGACGCA CAGCCCACAG CGCGTTGAAC CGCAGTGCCC TCACTTTACC CGCTGCGGCG GCTGCCAGCA GCAGCACGCG GACATCACGC TGCAACAGAG CAGCAAAACG GCCGCATTAA TGCGTCTGAT GACGCGGGAA ACAGGCGCTG AGTTGCCTGA CGCGTCTCTG ATTGCTGGCA CACCTTATGC CTATCGGAGG CGCGCGCGGC TTGCGTTATA CTTTCAGGCA AAAGAGCAGC GTCTGTTGAT GGGCTATCGG CAGTCAAATT CTCACGATTT GGTGGATATC AAAGCTTGTC CGGTGCTGCG CCCTGAGCTT GAAGCGCTGC TGCAACCGCT GCGCGACTGC CTGAGCCGAT TAAAGGCGGT GAAGCGCCTT GGGCATGTGG AACTGGTGCA GGCGGAAAAC GGTCCGCTGC TGGTGCTGAG GCACCTTGAT CCGCTGCATC CAGCGGATGA GCAGGCGCTG CGAGATTTTG CCGAGCAGCA GGGCGTCTCG GTTTATCTGG CGCCGGATGC CGATTCGCTG ACGTGTCTGC ACGGCGACGA GCCGGTTTAT CTCGTTGCCG GACTGACGCT GGCCTTTAGC CCGCGTGATT TTATTCAGGT CAATGATGCG GTCAACCAGC AGATGGTTGC ACAGGCGCTG GCGTGGCTGG ATGTGCAACC GCAGGATAGA ATATTAGATC TGTTTTGCGG TATGGGTAAC TTCACGCTAC CGCTGGCACA GCGCGCCGCC AGCGTCGTTG GCGTTGAAGG GGTAACCGCG CTGGTAGAGA AAGGGCGCGA AAATGCCCGA CGCAATGCGT TGTCCAATGT CACATTTTTT CACCAAAATC TCGAAGATGA CGTCACACAG CAGCCGTGGG TGGCTCAGGG TTTTGATAAG ATATTACTTG ATCCGGCACG TGCGGGCGCG GCAGGCGTGA TGGAGCAGAT AACCCGACTG GCACCTAAAC GGGTGGTGTA TGTTTCCTGT AATGCCACGA CGCTAGCGCG CGACAGCAAA GTATTACTGG CGGCAGGTTT TACGCTGGTG AATGTCGCGA TGCTGGATAT GTTTCCACAT ACCGGGCACC TTGAATCGAT GGCACTGTTT TTGCACGATA CCGGCACGCG AAAGGCGTAA
|
Protein sequence | MAQFYSPNRR VTTRKAIPAK NLTVTVTSLD PFGQGVARHE GKTVFVTGVL PGEQAEVQLT EDKRQFSHAK LKRLLTHSPQ RVEPQCPHFT RCGGCQQQHA DITLQQSSKT AALMRLMTRE TGAELPDASL IAGTPYAYRR RARLALYFQA KEQRLLMGYR QSNSHDLVDI KACPVLRPEL EALLQPLRDC LSRLKAVKRL GHVELVQAEN GPLLVLRHLD PLHPADEQAL RDFAEQQGVS VYLAPDADSL TCLHGDEPVY LVAGLTLAFS PRDFIQVNDA VNQQMVAQAL AWLDVQPQDR ILDLFCGMGN FTLPLAQRAA SVVGVEGVTA LVEKGRENAR RNALSNVTFF HQNLEDDVTQ QPWVAQGFDK ILLDPARAGA AGVMEQITRL APKRVVYVSC NATTLARDSK VLLAAGFTLV NVAMLDMFPH TGHLESMALF LHDTGTRKA
|
| |