Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3385 |
Symbol | |
ID | 8134365 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 3816201 |
End bp | 3818393 |
Gene Length | 2193 bp |
Protein Length | 730 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644866686 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_003018937 |
Protein GI | 253689747 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGCCC GAAAAAATAA TAGAAAAAAA GCACAGTGGT TATTGCCAGC ATTAATGGTG GTTGTTCCAC CTGTATTGAG CGCCGAACCG ATAACGAGTA AAGACAGCGA AAAGGCAAAA GCGGCTGACG TTATGGTCGT TAAGGCAGGG CGCAGTGAGG AGAATGCGAA TCTGGCTGGT GCAGGGATGA CGACCGATGA TGTGGAGATC GGGCCATTAG GTAAACGTTC AAGACTGGAT ACGCCGTATT CGACCACGAC TGTAACGGAA GCCATGATTG ACAATCAGCA GGCAAAAAAT GTTAACGATC TTCTGAAATA CAGCGCGTCC AGCCAGATGC AGGCGCGGGG CGGTATTGAC GTAGGCCGTC CGCAAAGTCG TGGTATGCAA GGCGACGTGC TGGCGAACAG CCGACTGGAT GGGTTAAACA TTATTTCCAC TACCGCCTTT CCGGTTGAGA TGTTGGAGCG ATTGGATGTC ATTAATAGCC TGACTGGCGC ACTGTATGGA CCAGCCAGCC CTGCCGGACA GTTTAACTTC ACGCAGAAAA GGCCAACGGC GCAGACGTTA AACCGTTTTA CCGTAGGCTA TTCCGGTAAA GGTGCCGCGA TGGGGCATGC TGATTTGGGC GGACATGTGG GGGACGAAAA TCAGTTCGGC TATCGCATCA ACCTGTTACA GGATGAGGGC GAAGGAAGTA CCAGCAACAG CACGCTGAGG CGTCAATTAG CCAGCGTCGC CTTTGACTGG AACCTCTCGC CCGATACGGT GTTGGAAGTT AACGCCAGCG AGTACCGCTT CCGCAAAATG GGCTATGCCA GTGGGTTTTC CTATGGACCG ACGATTCAGC TACCCAGCGC GCCGGATATT ACGAAACAGG GATACGGGCA AAGCTTTGCG GGTCTCGATC TGATAACAAA AACGGCCAGC ACCCGCCTGA AACACTACTT TAATAATAAC TGGTATGCCT CGGGTGGTGT GGGTTATCAA ACCGCCGATC GTGGCATGCG TTCACTATCG CATTCTATTA CCAACAATCA GGGCGCAGTG AGCACTTCTC TGACGCAACC CTACAGTGCC GGGCGCTTTA AGGTACTGAG CAATACGCTG CAACTGAACG GCCATATTGA TACGAACGGG CCTTCCCATG ATGTGGTCTT CAGTACCACC GGATACCAGT GGACGATCTA TAGCGGGCTG GGGAATGGCA AGCGCTTTCC GTTGGGAAGT AGCACCATTG ATTCACCACG TAATTACGCC GGTCCCAGCG ATGGGCGTTT TTATCTGGGA TCGGGTCGTT ATAAATCCAG CCGCACCAGC CAGCAGGCTA TCACGGCGGG TGATACCATC ACGTTCAACG ATCGCTGGTC GGCGATGGGC GTAGTGAGTC AAAGCTGGCT TACCTCACGC AGTTTTGGCT CTGATGGTGG CGTGACCCGT GATACCGGCA CCAGCCCGAC AGTGTCATTG ATGTACAAAC CGTTGCCTAA CGTGATGACC TATGTCGCCT ATGCCGATTC GCTGGAGCAG GGCGGCACTG CGCCAACGGA TGACTATGTG GTGAATAAAG GGCAGACGTT GAAGCCTTAC CGCAGTACCC AGTATGAAGC GGGGGTGAAA TCACAGTGGG ATGGGTTGAA TCTGAACGCG GCCATTTTCC GTCTGGAACG CCCTTTTGCC TATGTTGCGT CAGATAACGT TTTCAGGGAG CAAGGTAATC AGGTTAATAC CGGGCTGGAG CTGATGGCGG ATGGTGAAGT GCTTTCCGGC TTGCATGTCT ATGCCAGCAC AACGCTGCTG GATCCGAAAC TGACTGACAC AGGGATCGCA GCAACGACGA ATAAACGGGT GGTCGGGGTG CCGAAGTTGC AGGCCAACCT ACTGACGGAA TATAGCCACC CGTCTTACCC CAATATGGTC TATATCGCGA ACCTCCACTA CACCGGTAAG CGTGCAGCCA ATGATACCAA TACGACGTGG GCGGATAGCT ATGTCACGCT GGACTTGGGC ACACGCTACG GCTTTAAGTT GTACGATAAG CCTGCGGCGT TTCGCGTTGC ACTCAATAAT GTCACCAATG AGCGTTACTG GGCTTCTATT TTCCCCGGCA GCACAGATGG CATTAACGGC GGTGCCAACG CTTTCGTCGG CGATCCGCGT GAAATTCGCG CTTCTTTGAC CGTTGACTGG TGA
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Protein sequence | MKARKNNRKK AQWLLPALMV VVPPVLSAEP ITSKDSEKAK AADVMVVKAG RSEENANLAG AGMTTDDVEI GPLGKRSRLD TPYSTTTVTE AMIDNQQAKN VNDLLKYSAS SQMQARGGID VGRPQSRGMQ GDVLANSRLD GLNIISTTAF PVEMLERLDV INSLTGALYG PASPAGQFNF TQKRPTAQTL NRFTVGYSGK GAAMGHADLG GHVGDENQFG YRINLLQDEG EGSTSNSTLR RQLASVAFDW NLSPDTVLEV NASEYRFRKM GYASGFSYGP TIQLPSAPDI TKQGYGQSFA GLDLITKTAS TRLKHYFNNN WYASGGVGYQ TADRGMRSLS HSITNNQGAV STSLTQPYSA GRFKVLSNTL QLNGHIDTNG PSHDVVFSTT GYQWTIYSGL GNGKRFPLGS STIDSPRNYA GPSDGRFYLG SGRYKSSRTS QQAITAGDTI TFNDRWSAMG VVSQSWLTSR SFGSDGGVTR DTGTSPTVSL MYKPLPNVMT YVAYADSLEQ GGTAPTDDYV VNKGQTLKPY RSTQYEAGVK SQWDGLNLNA AIFRLERPFA YVASDNVFRE QGNQVNTGLE LMADGEVLSG LHVYASTTLL DPKLTDTGIA ATTNKRVVGV PKLQANLLTE YSHPSYPNMV YIANLHYTGK RAANDTNTTW ADSYVTLDLG TRYGFKLYDK PAAFRVALNN VTNERYWASI FPGSTDGING GANAFVGDPR EIRASLTVDW
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