Gene PC1_3383 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3383 
Symbol 
ID8134363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp3814359 
End bp3815036 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content55% 
IMG OID644866684 
ProductThiJ/PfpI domain protein 
Protein accessionYP_003018935 
Protein GI253689745 
COG category[R] General function prediction only 
COG ID[COG0693] Putative intracellular protease/amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATTT TAATGGTACT GACTTCTCAC GACAAACTGG GCAACACCGG CAATAAAACC 
GGCTTCTGGC TGGAAGAGTT TGCCGCCCCT TATTACACCT TTAAAGATGC AGGCGCCGAG 
CTGGTGCTCG CTTCCCCTGC TGGCGGCCAG CCGCCCCTCG ACCCGAAAAG CGATCTGGCC 
GATTTTCAAA CTGAGCTGAC GCATCGCTTT AAAGCCGACC CTGCTGCGCA GCAGGAACTG 
GCCAATACGG TAAAACTCGA TACCGTCAGC GAACAGGACT TCGATGCCGT CTTCTATCCC 
GGTGGTCACG GCCCGCTGTG GGATCTGGCA GAATCGCCGG TCTCTATCGC GCTCATCGAA 
GCCTTTGTAC GCGCCAACAA GCCGACTGGT TTTGTCTGCC ACGCACCGGG CGTCCTGATT 
CATGTGAAAG CAGAAAATGG CGACGCCCTG ATTAAAGGCC GCAAAGTGAC GGGCTTCACC 
AACGGTGAAG AAGAAGCGGT TCAGTTGACG GACGTAGTGC CTTTCCTGAT TGAAGATGAA 
TTCAAGAAAC TGGGTGGACT ATACGAAAAA GGCCCCGACT GGGCACCGTA CCTCGTTGAA 
GACGGCAAGC TGATCACTGG TCAGAACCCG GCAAGCTCGG AAGTCGTCGC CAAAGCGATC 
CTCAAACAGC TGGCTTAA
 
Protein sequence
MKILMVLTSH DKLGNTGNKT GFWLEEFAAP YYTFKDAGAE LVLASPAGGQ PPLDPKSDLA 
DFQTELTHRF KADPAAQQEL ANTVKLDTVS EQDFDAVFYP GGHGPLWDLA ESPVSIALIE 
AFVRANKPTG FVCHAPGVLI HVKAENGDAL IKGRKVTGFT NGEEEAVQLT DVVPFLIEDE 
FKKLGGLYEK GPDWAPYLVE DGKLITGQNP ASSEVVAKAI LKQLA