| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3281 |
|---|
| Symbol | |
|---|
| ID | 8134253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3695126 |
|---|
| End bp | 3696289 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644866574 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_003018833 |
|---|
| Protein GI | 253689643 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTCA ACGATATGCA GGTTCGTAGC GCGAAGCCTG AAGAAAAGCC CTATACACTC
GGTGACGGCT TAGGGCTGTC ATTACTTATT GAGCCGACAG GCAGCAAAAG CTGGCGTTTT
CGCTATCGTT TCGGCGGTAA GCCCAAGATG ATCTCTTTCG GCGCTTACCC ATTGGTGAGT
CTGGCTGAAG CGCGTAAAAA ACGCGATGAA GCACGTAAGC AGGTATTAGA CGGTATTAAT
CCAAGCGAGC AACGCAAAGC ACAAAAACTT AATCTGATGT CTGAATCAGA GAATACCTTT
GAAATAATCG CATGTGAGTG GCACGCCATG AAAAGTGCGC GTTGGTCGGC GGGGTACGCT
TCTGACATCA TGGAAGCTTT CAGGAATGAT ATTTTCCCCT ATGTAGGGAA GCGCTCCATC
GCAGAGATAA AACCGCTAGA ACTGCTTAAT GTGCTGCGCA AGATGGAGAA GCGCGGCGCA
TTAGAGAAAA TGAAAAAGGT TCGCCAGCGT TGCTCGGAGG TATTTCGCTA TGCGATAGCA
ACGGGGAGGG CAGAGATCAA CCCTGCGGCA GACTTGACCA GTGTACTTAC CACGCATAAA
GCACAGCATT ATCCCTTCCT TAAAGCCGAT GAGATCCCAA CGTTCATTCA GGCGGTTGAG
TCCTATACCG GTAGCGTATT AGTGCAAATC GCGGCCAAAT TGCTGATGCT GACCGGTGTG
AGAACAATAG AACTCCGTGC GGCTGAGTGG TCAGAATTTG ATCTCGAACA CGCAATCTGG
GAAATTCCAG CGGAAAGAAT GAAAAAGCGG CGTTCTCATC TTGTCCCTTT GTCCACACAA
GCGCTATCTT TGTTAAGCAA GTTACAAACC ATCAGCGGCA ACTATAAATA TGTGTTTCCC
GGTCGGAACG ATCCCAATAA GCCCATGAGC GAGGGAAGCA TCAACCGTAT GATAAAGCAT
ATAGGTTATG AGGGACGGTT AACGGGACAT GGTTTCAGAC ATACCATGTC CACTATCTTG
CATGAGAAGG GCTATGACTC CGCTTGGATT GAAATGCAGT TGGCGCATGT GGATAAGAAT
AGCATTCGTG GGACTTATAA TCATGCTCTG TATCTTGAAC AACGGCGGGA TATGATGCAG
TGGTATTCTA ATTGTTTTTT ATAA
|
|---|
| Protein sequence | MALNDMQVRS AKPEEKPYTL GDGLGLSLLI EPTGSKSWRF RYRFGGKPKM ISFGAYPLVS
LAEARKKRDE ARKQVLDGIN PSEQRKAQKL NLMSESENTF EIIACEWHAM KSARWSAGYA
SDIMEAFRND IFPYVGKRSI AEIKPLELLN VLRKMEKRGA LEKMKKVRQR CSEVFRYAIA
TGRAEINPAA DLTSVLTTHK AQHYPFLKAD EIPTFIQAVE SYTGSVLVQI AAKLLMLTGV
RTIELRAAEW SEFDLEHAIW EIPAERMKKR RSHLVPLSTQ ALSLLSKLQT ISGNYKYVFP
GRNDPNKPMS EGSINRMIKH IGYEGRLTGH GFRHTMSTIL HEKGYDSAWI EMQLAHVDKN
SIRGTYNHAL YLEQRRDMMQ WYSNCFL
|
|---|
| |