| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3237 |
|---|
| Symbol | |
|---|
| ID | 8134209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3645943 |
|---|
| End bp | 3647313 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644866534 |
|---|
| Product | PAAR repeat-containing protein |
|---|
| Protein accession | YP_003018793 |
|---|
| Protein GI | 253689603 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4104] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGGAG CTGCACGTTT AGGGGACAGC TGCGCGGGTC ACGGCTGTTT TCCTGCCACC
CCGATTATTG AAGGCAGTGG TGATGTCATC ATTAATGGCA AGCCGGCGGC CCGCAAAAGC
GATGCGGTCT TACTTCACGC CTGCCCTTGC CCGAATATGC CTCACGGCGT ACATAATCGT
GCGATATCGG CAGGATCCGG TACGGTCATT ATCAATGGCA AGCTGGCGGC GCGTATCGGC
GATGCGATCG GCTGCGGCGG CTCGGTTGCC GCTGGCAGTG GGAACGTCAT TATTGGTGAC
TCGCCCTATC AGTCCCCGGT GAAACCCTGC GCTGAGCAAT CGGCAAAAAG CCGCGCACCT
CTGCTGGCAT TGACGCCGAT GCTGTTGCCG ACATTAATGG AGTGGGCTTC GGTCGCCGAG
CTGCCTATTC TTGATGACTT GCTCTCCGTC GCCCAGCGTA AAGAGCGCTA TCTGGCGCGT
GCCAAGTTGG CGACCGAGGC AGCGACGCTG CCGGGATTAG CCGATGCGGC AAAGCGGCTG
GCGTTTAATA ACGGCAGCAT CTTACGCGCA GAGGCTGCCC AGTATGTTTA CTCGGTCGAT
GAATTCCGAC GCGGCGTGTT GGATAAATTA CCGAAAGCAC CCGTGGGGTT GGATGTTCTG
GATACGAGTC TATTACCGGG TCTTAAAGGG GCAAAATTTA TGGACCCTGA TTCAGGGTTT
GGTTCTGCTT TATTCAAGTC TGCGATTAAC GGCGAAACGA TGCTGACCTA TCGGGGAACG
AACAATGCGG TAACGGGAGT TAAAGACTGG TTGACCAACG CGGGTCAAGG AATGGGGCTG
GAGACAGAGC AATACAAGCA AGCGATGTAT TTAGCGAAGC AAGTGAAGGA AGCGATCTCT
CCCCCCCCTG TTATTGTTGG ACATTCATTA GGCGGTGGTT TGGCATCCGC GGGGGTTGGA
GTCACTGGAT TACCCGGCTA TACCTTTAAT GCTGCTGGCT TGCACGCCAA TACGGTGTCT
CGTGCTGGCG GCGCCGATCT GGCGAAAACC GCCTCGTTAA TAAAGACACA AGCGGTGGAC
GGCGAGGTCT TAACCATGGC GCAAACTTAC GGTAAGGCGT TGATTCCTGG CTTGCTATCC
GGGGCTGGCG CATTGATTGG CGGAACCGCC GGCGCGGTGC TTGGTGGCGT CATCGGTATT
GCTAAACTGT TAGAGGGCGG GCTGCCGAAA GCAAGCGGTG ATATGATGGC GCTTCCCGCT
GTAGGCGGTT CACCGATTGC GCGTCACGGT ATGGATCAGG TGATTGCGGG TATTGAAAGC
CAGAAAAAGG AAGATATCGG GAAGATAACC AATACATTCA GGGGAATATA A
|
|---|
| Protein sequence | MPGAARLGDS CAGHGCFPAT PIIEGSGDVI INGKPAARKS DAVLLHACPC PNMPHGVHNR
AISAGSGTVI INGKLAARIG DAIGCGGSVA AGSGNVIIGD SPYQSPVKPC AEQSAKSRAP
LLALTPMLLP TLMEWASVAE LPILDDLLSV AQRKERYLAR AKLATEAATL PGLADAAKRL
AFNNGSILRA EAAQYVYSVD EFRRGVLDKL PKAPVGLDVL DTSLLPGLKG AKFMDPDSGF
GSALFKSAIN GETMLTYRGT NNAVTGVKDW LTNAGQGMGL ETEQYKQAMY LAKQVKEAIS
PPPVIVGHSL GGGLASAGVG VTGLPGYTFN AAGLHANTVS RAGGADLAKT ASLIKTQAVD
GEVLTMAQTY GKALIPGLLS GAGALIGGTA GAVLGGVIGI AKLLEGGLPK ASGDMMALPA
VGGSPIARHG MDQVIAGIES QKKEDIGKIT NTFRGI
|
|---|
| |