Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3061 |
Symbol | |
ID | 8134016 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3466364 |
End bp | 3467716 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644866344 |
Product | type I secretion outer membrane protein, TolC family |
Protein accession | YP_003018620 |
Protein GI | 253689430 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTCGTA GATACCATTT TGCTTTATTG CCTTTTATTA CCGTTTTTTC CACAGCGACG TATGCAGAGA CGATCCAGGA AGCCATTAAA AGCACGCTCT ATACCCACCC CGAAGTGAGC GCATCTATTA ATAGTCGTTT TTCTGCCGAG CATGATTTGC GCGCAGCAAA AGGGGGATAT CTTCCCTCCA TCACGCTGAG TGCTGGCGTT GGCCGCGAAG AAACCGATAG CCCCTCAACA CGCGCCAGCA TCAATAAACG CGTTGAACTC AGCCGTCAGG AATCGAGTAT CAATTTAAGC CAGACGGTGT TCGATGGTTT CGCCACTTCA AGCGAGGTTG GCAGACAACG CGCCACAGTC AACTCACGCG CCTATAAAGT ATTAAATACC AGTGAGTCGA CAGCATTAGA TACCGTTCAG GTCTATCTCA ATGTTCTGCA ACGTCAGGAA TTTGTCCGCC TGGCGGAAGC CAATCTGGCA AGCCACGAGC GCATTTACGA TCAAATCAGG CTACGCAGCG AACAGGGCGT TGGCCGTCTG GCGGATTTGG ATCAGGCCGA AGCACGTCTT GCGCAGGCGC GTAATAACGT GCTGACAGAA CAAACCAATC TGGACGATGC CAAAATCAAC TACATGAGCG TTGTGGGTAA AGTGCCGGAT AATTTGGTGA TGCCCGATGC TTCTGTAATA AAACTCCCCG CGTCGTTGGA GGAAGCCCAG CGCATCATGT TGGCTAACAG CCCAGCGCTG AAATCCGCAG AGTCAGATAT TGAAGCCACG CAGCAGCAAT ATGAAGCGTC GAAATCAACG TTTTATCCAC GCCTCAACGT TGAGCTCTCT CGAACAATGG ATAACAACGT TGACGGGACG CGCGGTCAAA ACAATGAATG GCAAGCGATG CTGCGGATGC GCTACAACCT GTATGAAGGC GGTAGCAGCA AAGCCAACAT GGAATCAAAA GCCTATCAGG TAAAAGAAGC GCAGGATGTG CGAAATAATG CCCTGCGCCT GCTGGGTGAA GAGCTAAAGC TAGCCTGGTC AGCGTTAAAT AACTCGCGCC AGCAGTTGCC GATCGCCGCC GAATATGCAG ACCGCAGTAT GAAAGTGCGT ACCGCCTATC AGAAACAATT TAGTCTGGGA GAAAGGACGC TGTTGGACCT GCTGGACAGT GAAAACGAGC TGTTCACCGC ACAACGCCGT CTGGTAGAAG TTCGCTTCAC CTCCCTCTAT ACCGAATACC GGATCGCATC ACGTATGGGA GAGCTATTAA ATCGTTTGGC TATCCCAGCC CCTGATGCCG GTACCAGCTT GACAAACGTA ACCACCCACG CAGAGTTGCC GAGCCTTAAT TAA
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Protein sequence | MIRRYHFALL PFITVFSTAT YAETIQEAIK STLYTHPEVS ASINSRFSAE HDLRAAKGGY LPSITLSAGV GREETDSPST RASINKRVEL SRQESSINLS QTVFDGFATS SEVGRQRATV NSRAYKVLNT SESTALDTVQ VYLNVLQRQE FVRLAEANLA SHERIYDQIR LRSEQGVGRL ADLDQAEARL AQARNNVLTE QTNLDDAKIN YMSVVGKVPD NLVMPDASVI KLPASLEEAQ RIMLANSPAL KSAESDIEAT QQQYEASKST FYPRLNVELS RTMDNNVDGT RGQNNEWQAM LRMRYNLYEG GSSKANMESK AYQVKEAQDV RNNALRLLGE ELKLAWSALN NSRQQLPIAA EYADRSMKVR TAYQKQFSLG ERTLLDLLDS ENELFTAQRR LVEVRFTSLY TEYRIASRMG ELLNRLAIPA PDAGTSLTNV TTHAELPSLN
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