Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3058 |
Symbol | |
ID | 8134013 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3449391 |
End bp | 3451343 |
Gene Length | 1953 bp |
Protein Length | 650 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644866341 |
Product | diguanylate cyclase/phosphodiesterase with extracellular sensor |
Protein accession | YP_003018617 |
Protein GI | 253689427 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTCTAT ACAAACAACT ACTGATAGCC ATCTGCCTGT TTGTGCTAAT CATTTTCAGC GGGAGCTTTT TCGTCAGTCT GGAAAATTCG CGTGAACAGT ACAACAACCA GCTTCACTCT CACGCTCAGG ATGCCGCCAC CGCGCTTGGG CTTTCCCTGA CGCCGAATAT CGATGACCCG GCCATGGTCG AACTGATGGT CAGCTCGATT TTCGACAGCG GCTATTTTTC CAGTATTCGC GTGCGGGATT TAAAAACCGG CAATGTCACG CTGGAGCGTA CCGCATCACC GGATATCCCT GACGTACCGG GCTGGTTTGT CCGGTTAGTG AACCTGCAAC CCGGCGCGGG CGAAGCCATC GTGATGCGCG GCTGGGAACA GGCAGCAAAA GTCGAAGTTA TCAGCCACCC GATGTTCGCG GTGACCCGAC TGTGGCGCAG CAGTACCGCA ACTTTCCTGT GGCTGCTCGG CTGCGGCACG CTGGGCGTGT TTATTGGCGC GCTGTTCCTG CGCCGCCAGT TACGCCCCCT CGATTATATT GTCGATCAGT CGCTGGCGAT TACCCGTCGA GAGTTCCTTA GCCAGCCGGA TTTACCTAAT ACGCCGGAAT TTCGTCGCGT AGCACAGGCG ATGAATCTGA TGGTCAGCAA GCTCAAAACG CTGTTTGAAG AAGAAGCCGA ACGGAGCGAG CGCTTACGTC AGGATGCCTA TCAGGATCCA CAAACCGGAT TAAATAACCG GCGTGCGTTT GACATGCAGT TCAACGATAA GCTGGCTGAT GAAGAAACCG CACCCGGCTT CCTTATTATG CTTCGCGTTC AAGATTTGGC GGGGATGAAT CAGCGACTGG GCGGCCAGCG TACCGATGCG CTGTTAGCCT CTGTTGGGCA TATTCTGCGT AAAACACAAA AGCAGCATAC GAATACAGAA AGTCTTCTGG CACGTATTCG CGGGGGAGAA TTTGCGCTGT TCTGCCCAGG ACTGGTCGAT AAAGAAGCCT ATGCGCTGAT TGGCGAACTG ACGCGCAATA TCGAAACGTT ACACCTGACG GGCGAAACCG ACGTCTCCCC TGTCGCCCAA TTCGGTATGG TGCCTTTCCG TCCCGGCGAC ACTGCACAAT CCCTGTTTAT TCAGGGCGAT CAGGCGCTCA CGCAAGCCGA AAGCAATACC GATACCACCG CCCCTCGCGA GATCCCATCC GTCAGTGCCG AACAGATCGA AACCGATCGC CATAGATGGT TTAACCTGCT CGACCCGATC CTTGAACAGG AACGCTTACA GCTTTTCCTG CAACCCGTCG TCGCGTGTGA CGATCCCAGT CAGGTACTGC ATCACAAGGT ACTGGCTCGC ATTCAGGATG AGCAAGGAAA CAGTATCGCC GCGGGCCGTT TCCTGCCGTG GATCCAACGC TTTGGCTGGG ATACGCGTCT GGACCAGACG ATGCTGCGCG AAGTGTTGGA TTATTTGCGC CAGCACGACG GCAACCTCGC GCTGAGCCTG TCTGGCGCCA CCGTCCTGAA TCGTCACCTG CTCGCCGATC TGCTTGCCCC GCTAAAACAT CAGCCGGATG TTGCCAGTCG ACTGATTCTG GAACTGGATG AGAATCAATT GCCAGACAGC GCCCAACTGG AAGCCTTAAT CAAATTATTG AATGAGCATG GCTGTGCGCT GGGGCTCCAG CATTTTGGTG GACGCTTTAA TATGATCGGC AACCTGTCCC AATGGGGGCT GGCTTACCTG AAAGTTGATG GCAGCTACAT CCGTAATATC GATCAGGAAA GCGATAAGCA AATGTTTATC GAAGCACTGT ATCGTGCCAC CAATAGTATT GCCCTACCGC TTATCGCTGA ACGCGTTGAA ACCGCAGGTG AGCTGAAAGT GCTACAGGAT ATGGGATTAC AGGGAGCAAT GGGACGGCTA CTGGGTGAAC CCGCGCCAGC CGCCAGATCC TAA
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Protein sequence | MSLYKQLLIA ICLFVLIIFS GSFFVSLENS REQYNNQLHS HAQDAATALG LSLTPNIDDP AMVELMVSSI FDSGYFSSIR VRDLKTGNVT LERTASPDIP DVPGWFVRLV NLQPGAGEAI VMRGWEQAAK VEVISHPMFA VTRLWRSSTA TFLWLLGCGT LGVFIGALFL RRQLRPLDYI VDQSLAITRR EFLSQPDLPN TPEFRRVAQA MNLMVSKLKT LFEEEAERSE RLRQDAYQDP QTGLNNRRAF DMQFNDKLAD EETAPGFLIM LRVQDLAGMN QRLGGQRTDA LLASVGHILR KTQKQHTNTE SLLARIRGGE FALFCPGLVD KEAYALIGEL TRNIETLHLT GETDVSPVAQ FGMVPFRPGD TAQSLFIQGD QALTQAESNT DTTAPREIPS VSAEQIETDR HRWFNLLDPI LEQERLQLFL QPVVACDDPS QVLHHKVLAR IQDEQGNSIA AGRFLPWIQR FGWDTRLDQT MLREVLDYLR QHDGNLALSL SGATVLNRHL LADLLAPLKH QPDVASRLIL ELDENQLPDS AQLEALIKLL NEHGCALGLQ HFGGRFNMIG NLSQWGLAYL KVDGSYIRNI DQESDKQMFI EALYRATNSI ALPLIAERVE TAGELKVLQD MGLQGAMGRL LGEPAPAARS
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