Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2970 |
Symbol | |
ID | 8133925 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3355980 |
End bp | 3357380 |
Gene Length | 1401 bp |
Protein Length | 466 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644866253 |
Product | multidrug efflux system protein MdtE |
Protein accession | YP_003018529 |
Protein GI | 253689339 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAATT CCGCCTCTGT CCGCTGGCAG CTCTGGATTG TTGCCTTTGG CTTTTTTATG CAGACGCTGG ATACCACCAT CGTGAATACC GCGCTGCCGT CAATGGCCGC GAGTCTGAAT GAAAGCCCGC TGCATATGCA TTCGGTGATC GTTTCCTATG TGCTGACCGT GGCGGTGATG CTGCCCGCCA GCGGCTGGCT GGCGGATCGT ATCGGCGTGA AGAACATATT TTTCGCCGCG ATTCTTCTGT TTACGCTCGG ATCGCTGCTG TGCGCTCGTT CGGAAACGCT GAATGAGCTG CTGGCCTCGC GCGTTATTCA GGGGATCGGC GGAGCGATGA TGGTGCCGGT AGGGCGACTG ACGGTGATGA AAATCGTCCC GCGCGATCAG TATATGGCGG CGATGACCTT CGTGACGCTG CCCGGCCAAA TCGGTCCGTT AATGGGGCCC GCACTCGGCG GCTTTCTGGT GGAGTACGCC AGTTGGCACT GGATCTTCCT CATCAACCTG CCCGTTGGCA TTATCGGCGC GCTGGCCACC TGGTTCCTGA TGCCCAATTA CACCATGCGG ACGCAACGCT TTGACATCAG CGGCTTCCTC TGGCTTGCTG TCGGTATGGC GACGCTGACG CTGGCGCTGG ACGGTAACCG CAGCCTCGGC ATTCCACCGA TTGCCATTTT TGCATTAATC ACCGTTGGGC TGATCGCACT GCTGAGCTAT TGGCTGCACG CGCGTCGTAA CGAACGAGCC CTGTTTAATC TGCGTCTGTT CGACACCCAT ACCTTCTCTA TCGGCCTGAC AGGCGGGCTA TTGGCGCGCA TCGGCAGCGG TATGTTACCG TTTATGACGC CGCTGTTTTT ACAGCTGGGA ATGGGCTTTT CGCCGTTCCA TGCCGGGCTG ATGATGGTGC CAATGGTGCT AGGCAACATG GGAATGAAGC GAATCGTCGT GCAGATCGTC AATCGCTTAG GCTACCGCCG CGTGCTGATT GTCTCGACAC TGCTGCTGGC ACTGGTCACC GCGCTGTTTG CGCTGGTCGC ACTTATGCAA TGGATCTGGA TGATCCCGAT CGTGCTGTTC TTCCTCGGCA TGGTGAACGC CATTCGTTTC TCCACCATGA ACACGCTAAC GCTGAAGGAT CTACCGGATA CACTCGCCAG CGGCGGCAAT AGCCTGATGT CGATGACCAT GCAGTTGTCC ACCAGCCTCG GCGTCAGCAT CGCAGGTATT CTGCTGGGCA TGTTTTCTCA ACCGCACATG GCGGCAGGAA GTGGAGAAAC CCACATGGTG TTTATTTACA CCTACCTCAG CATGATCGTC ATCATCGCCC TGCCCGCATT GATTTTTAAC CGTGTCCCGG CAGACACCAT CAAGCAGTCA ACGCTGCCGC GTAAATCGTG A
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Protein sequence | MMNSASVRWQ LWIVAFGFFM QTLDTTIVNT ALPSMAASLN ESPLHMHSVI VSYVLTVAVM LPASGWLADR IGVKNIFFAA ILLFTLGSLL CARSETLNEL LASRVIQGIG GAMMVPVGRL TVMKIVPRDQ YMAAMTFVTL PGQIGPLMGP ALGGFLVEYA SWHWIFLINL PVGIIGALAT WFLMPNYTMR TQRFDISGFL WLAVGMATLT LALDGNRSLG IPPIAIFALI TVGLIALLSY WLHARRNERA LFNLRLFDTH TFSIGLTGGL LARIGSGMLP FMTPLFLQLG MGFSPFHAGL MMVPMVLGNM GMKRIVVQIV NRLGYRRVLI VSTLLLALVT ALFALVALMQ WIWMIPIVLF FLGMVNAIRF STMNTLTLKD LPDTLASGGN SLMSMTMQLS TSLGVSIAGI LLGMFSQPHM AAGSGETHMV FIYTYLSMIV IIALPALIFN RVPADTIKQS TLPRKS
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