| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2806 |
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| Symbol | mnmC |
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| ID | 8133759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3179164 |
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| End bp | 3181191 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644866094 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_003018372 |
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| Protein GI | 253689182 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.641074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACGAACC TCCCCATCCA ACATGCGTCG TTAAGTTGGA ACGCTCAGGG TACACCTGTA
TCGCAACAGT TTGATGACGT CTATTTTTCG AATCAGGATG GGTTAGCTGA AACCCGTTAT
GTGTTTTTAA AGGGCAATCA GTTTCCTGAG CGTTTCGCCA CACATCCGCG CACTGCCTGC
GTGATAGCAG AAACTGGCTT TGGCACGGGC CTGAATTTTC TTACGCTATG GCAAGCCTTT
GCCGACTTTC GTCAACAGCA GCCACAGGCG ACCTTGCGCC ACCTGCATTT CATCAGCTTC
GAGAAATTCC CTCTGCGTCG GCATGATTTG GCAGCCGCAC ACGCCCAGTG GCCGGAACTG
GCCGCCTTTG CGGATGAACT GCGTGAGCAA TGGCCGCTGC CGCTGCCGGG TTGCCACCGC
TTGATTCTGG CGCAAGGCGC TATCACGCTC GATTTATGGT TTGGTGACGT CAACACGTTG
CTGCCTGAGT TGGATGACAC CCAGAATCAT CAGGTCGACG CCTGGTTTCT GGACGGCTTC
GCCCCCGCCA AAAACCCGGA CATGTGGACA GATAATCTGT TTCAGGCAAT GGCTCGTCTG
TGCCGTAAAG AAGGCACGTT TGCCACCTTT ACCGCTGCGG GCTTTGTACG TCGCGGTCTG
CAACAGGCGG GGTTTCAGGT CAGTAAAGTC AAAGGATTCG GGCAAAAACG CGAGATGCTG
AGCGGCATCC TTCCCGAGAC GCTCCCCATC ACCTCGCCGA CACCGTGGTA TGCGCGTCCT
GCGGCCAGCA CGACTGACGA TATTGCGATT ATCGGCGGCG GCATCGCCAG CGTGCTCACC
GCACTGGCGC TGCAACGGCG CGGGGCAAGG GTCACGCTCT ACTGTGCGGA AGCCCAGCCT
GCCACAGGTG CCTCCGGCAA TCGTCAGGGT GCGCTGTATC CTCTGCTGAA TAATCGGCAC
GATGCGGTAT CCCGCTTTTT CTCCCTTGCT TTTGACTTTG CCCGCCGCAG TTACACCGCA
CTGGCGCAAC AGGGTCTGGC ATTTGAGCAC CAGTGGTGCG GAGTTAGCCA GCTCGCCTGG
GATGAAAAAA GCGCGCGTAA GATCGAACAG ATTCTGCAAG GAGAATGGCC GGAAGAGTTA
GTCATTAGCG TGGATGCACA ACAACTGGAA AACCAAAGCG GTCTGAATCC CGGCGTAAAC
GGCATCACCT ACCCCGACGG CGGCTGGCTG TGTCCGGCAG AACTAACAGC CGCTGCGTTG
AAGCTGGCAC AGCAGAATGG CCTGTCGGTA CAGATGAATA CCCCCGTTTC CGCACTGGAG
AAAACGGACG ACGGCTGGGC ACTCACCTTC AGTACCGGCC AACGGGTAAG TCATGCGGTT
GTGGTGCTGG CAAATGGCTA TCACATTACT GATTGGCCGC AAACTCATCA TTTACCCGCC
TACGCCGTGC GCGGGCAGGT CAGTCATATT CCCACTAACC CCGTGTTGGG GCAGCTTAAA
CAGGTTCTGT GCTATGACGG CTATTTGACA CCGGTCAGCC CGCGCCATCA AACGCACTGC
ATCGGGGCAA GTTATGTACG GGGAGAAACC CGCTGTGATT ATCGGGAAGA AGAACAGCAA
GAGAACCGCC AGCGGCTACT GAACTGCTTG CCCCACGCAG AGTGGGTCAA GACGATCGAT
GTCAGCAATG CGCAAGCACG TCAGGGTGTG CGCAGTGCAC TACGCGATCA TCTGCCGCTG
TTAGGAGCCG TCCCGGACTA TGAACAAACG CTGGCAGAAT ATGAAGATCG GCTGCATCCA
CAGCACCGTG CCGACGCCGT GCCGAGTGCA CCTTATTGGC GAGATCTGTT TATTATCGGT
GCGTTAGGCT CACGCGGGCT CTGCTCTGCC CCACTCGCGG CAGAAATTTT GGCTTCACAA
ATGTATGGAG AACCGCTGCC GCTGGATCGC GACACGCTTG CTGCGCTAAA CCCGAATCGC
TTCTGGATAA GGAAACTGCT GAAAGGCAAA CCCGTCACTC AGGATTAA
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| Protein sequence | MTNLPIQHAS LSWNAQGTPV SQQFDDVYFS NQDGLAETRY VFLKGNQFPE RFATHPRTAC
VIAETGFGTG LNFLTLWQAF ADFRQQQPQA TLRHLHFISF EKFPLRRHDL AAAHAQWPEL
AAFADELREQ WPLPLPGCHR LILAQGAITL DLWFGDVNTL LPELDDTQNH QVDAWFLDGF
APAKNPDMWT DNLFQAMARL CRKEGTFATF TAAGFVRRGL QQAGFQVSKV KGFGQKREML
SGILPETLPI TSPTPWYARP AASTTDDIAI IGGGIASVLT ALALQRRGAR VTLYCAEAQP
ATGASGNRQG ALYPLLNNRH DAVSRFFSLA FDFARRSYTA LAQQGLAFEH QWCGVSQLAW
DEKSARKIEQ ILQGEWPEEL VISVDAQQLE NQSGLNPGVN GITYPDGGWL CPAELTAAAL
KLAQQNGLSV QMNTPVSALE KTDDGWALTF STGQRVSHAV VVLANGYHIT DWPQTHHLPA
YAVRGQVSHI PTNPVLGQLK QVLCYDGYLT PVSPRHQTHC IGASYVRGET RCDYREEEQQ
ENRQRLLNCL PHAEWVKTID VSNAQARQGV RSALRDHLPL LGAVPDYEQT LAEYEDRLHP
QHRADAVPSA PYWRDLFIIG ALGSRGLCSA PLAAEILASQ MYGEPLPLDR DTLAALNPNR
FWIRKLLKGK PVTQD
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