| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2774 |
|---|
| Symbol | |
|---|
| ID | 8133727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3147805 |
|---|
| End bp | 3149019 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644866062 |
|---|
| Product | aminotransferase AlaT |
|---|
| Protein accession | YP_003018340 |
|---|
| Protein GI | 253689150 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.363004 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCCGA TTGAAAAATC CAAGAAACTG GAGAACGTAT GCTATGACAT CCGTGGCCCA
GTCTTAAAGG AAGCCAAACG GCTTGAAGAA GAAGGTAATA AAGTCCTTAA GCTGAATATT
GGTAACCCAG CTCCTTTTGG CTTCGAGGCA CCGGACGAGA TTCTGGTCGA TGTCATCCGT
AACCTGCCCA CGGCACAGGG CTACTGTGAT TCCAAAGGCC TCTATTCCGC CCGCAAAGCC
ATCGTTCAGC ATTATCAGGC GCGGGATATG CGCGATATTA CGGTTGAAGA TGTCTACATT
GGTAACGGTG TGTCCGAGCT CATCGTGCAA TCCATGCAGG CACTGCTTAA CCCAGGCGAT
GAAATGCTGG TTCCTGCGCC GGACTACCCA CTTTGGACCG CAGCCGTTTC TCTGTCTAAC
GGCAACGCCG TTCACTACCT CTGCGATGAG TCCTCCGATT GGTTCCCCGA CCTGGATGAT
ATCCGTAAAA AGATCACGTC CAATACTCGC GGTATTGTCA TTATCAACCC GAACAATCCA
ACGGGCGCGG TCTACAGTAA AGAGTTGCTG CTGGATATCG TGGCGATTGC ACGCGAACAT
AACCTGATCA TCTTCGCTGA CGAAATTTAC GACAAAATTC TGTATGACGA TGCACAGCAT
CACTCGATTG CCGCACTCGC GCCGGACCTG CTGACGGTCA CATTCAACGG CCTGTCCAAA
ACGTACCGTG TAGCAGGTTT CCGTCAAGGC TGGATGGTAC TGAACGGTCC GAAAAAACAC
GCCAAAGGCT ATATTGAAGG GCTGGAAATG CTGGCTTCCA TGCGTCTGTG CGCTAATGTG
CCAATGCAGC ATGCGATTCA GACTGCGCTG GGCGGCTATC AGAGCATCAG CGAATTTATT
CAGCCCGGCG GACGCCTGTA CGAGCAGCGC AACCGTTCCT GGGAACTGAT CAATCAGATT
CCCGGCGTAT CATGCGTAAA ACCGCGCGGC GCGCTGTATA TGTTCCCACG CATTGATGCC
AAACGCTTTA ATATCCATGA CGACCAAAAA CTGGTGCTGG ATCTCCTGTT ACAGGAAAAA
GTGTTGCTGG TTCAGGGAAC CGCATTTAAC TGGCCTTACC CAGACCATGT TCGCATCGTC
ACGCTGCCGC GTATCGATGA GCTGGATATG GCAATCCACA AATTAGGGCG TTTCTTGGGG
CACTATCACC AGTAA
|
|---|
| Protein sequence | MSPIEKSKKL ENVCYDIRGP VLKEAKRLEE EGNKVLKLNI GNPAPFGFEA PDEILVDVIR
NLPTAQGYCD SKGLYSARKA IVQHYQARDM RDITVEDVYI GNGVSELIVQ SMQALLNPGD
EMLVPAPDYP LWTAAVSLSN GNAVHYLCDE SSDWFPDLDD IRKKITSNTR GIVIINPNNP
TGAVYSKELL LDIVAIAREH NLIIFADEIY DKILYDDAQH HSIAALAPDL LTVTFNGLSK
TYRVAGFRQG WMVLNGPKKH AKGYIEGLEM LASMRLCANV PMQHAIQTAL GGYQSISEFI
QPGGRLYEQR NRSWELINQI PGVSCVKPRG ALYMFPRIDA KRFNIHDDQK LVLDLLLQEK
VLLVQGTAFN WPYPDHVRIV TLPRIDELDM AIHKLGRFLG HYHQ
|
|---|
| |