| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2569 |
|---|
| Symbol | |
|---|
| ID | 8133517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 2936082 |
|---|
| End bp | 2939513 |
|---|
| Gene Length | 3432 bp |
|---|
| Protein Length | 1143 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644865853 |
|---|
| Product | Methyltransferase type 11 |
|---|
| Protein accession | YP_003018136 |
|---|
| Protein GI | 253688946 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCTAG ATACTGCCGC CAGCCATCCA ACAACGAGCG CTGCTGATCG CTGTCCTTTG
CCTTATACCT CACCGACGCA TTTGCAGGCA GTAGCATACT TGCATGGCAT TGTGGCAGCG
GATCCTGATA GAGCACGGGT ACTGGAACTG GGATGCGTGA GTGGCGCGAA CCTGTTGCCA
TTTGCTACTG CTTATCCGCA GGCGCAGGCT ATTGGTATCG ATCTTGATGA GGAAAAAATT
GCGCAAGGGC AGATGTGGGT TCAGCAATAT GGATTAACCA ATCTGCAACT CCAGGCAATG
GATTTGGCAT CGCTTTTGGA CAGCCATCTT GGCAAATTTG ATTATATCAT TGTCCATGGT
GTTTTCGGAC TGGTTAGCGG CGAAGCTCGC TCGGCGTTGT TAGCATATTG TCACCGTCAT
TTAAGTGCAA AAGGCGTGGT GTGTTTTTCC TATTCGACCT ATCCTGGCGG GAAGACAGAG
GAAATTCTGC AGGATGCTTT AAATCTGCAC GCGAGTCTGG CAGAAACACC GGAACAACAG
CAAGCCAGCG CAAGAGCCAT GTTGAGCTAT TTATCGCTGG GCATGTCTGC AAATAACCCT
CAAAGAGCCG CTATTGCGAC TCTGGTTGAA GAAGCCGAAC AACTGGGCGA TGTGTCGCTA
GCGCTCAACT ATCTACAAGG CCTGAATCAA CCCTGCTATC TGCTCGACTT TAATGCACTG
ATTAAGCAGG AAGGCTTGGC TTATGTTGGC GAAATTGAGC CTCACACTGA GATTGCCTCT
CACTATGGTG ACCAGGTAGA TAACTTACTG CGCACGATCT GTCCGACTGG CAATAAGATA
TTGAAACAGC AGTATCTGGA TTTTAACGTT GGACGTAAAC GTCGGTTTAG TCTGCTGGTC
GCTGCTGAAC GGGCGGAAAA GTTGGAATCG GAAATTGATG TCTCGCGGCT GGATAAACTT
TCCTGGGCCG GGAGTTTCCG CCGTAGCATG TTGAATAAAG GTTTGGCGTC CAACGCTTAT
TCGACTAATA CTGGAATACA GATATCGACC GATCACGAAC TTACCCAGCA AATTCTGGAT
GTCTTAGGTA ATGCGTGGCC TGCGAGTGTT TCCTTTAAGG AACTGATATT TAATACGCAT
TTTCCTGAGA AAGAAAATGA TAAACACGAA CATGAAAACA ATGTGCGTGA ATCCCTTTAT
GCTTTGTTAA AGCAAGGGTT ATCGAGCATT CATTTCTGTG TCGGTGAATG TGCTTATCGT
AAAAGCGAAT TCAGTACGCT GCGAGTATTA CCGAATTGTG GGGGTAATTA TCCAGTATTT
AACTACTGGT ATGAGTCTTT CACTTTACCG TCAGAGGCCC AAGGGCTAAA AATTCCGATG
GACTTATTAG ATGAGCAGAA CGAGGGCTCA TTAGCGCTGC TGGATGAATT GCATCATAAA
GGTCTGATGG TCGGCAGCGC TCTGGCGTGG CAACGTTACT TCCAAAAACG TTTGGAATTG
GCGAAGGACG TCAAGGAAGT AATCCATAAT ATCAATCCGT TGCTCATATA TTCCAGCAAC
GCGAGTGGCG GTGGCTTATT CAAGGCTAGT GACGCTATAA AGGTTGAAAA AAGCCGAAAA
GAATTCGTTA ATAACGCGAT TGATGCGAAA GTCAAACATC AATTATATGA GTTATTAAAG
CAACAGAAAT ACAATGAAGC TCGTTCTCTG GCAGAAGAGT TGACGATAAA ACAGCCGAAT
AATTTACAGA ATTGGATTAC GCTAGAGAGA ATTAACTTCG TTACTGGGGA TAAAAATGCG
GCAATATTCT CTTTGGCGAA AGTTATTTCC ATGTATAGCA ATGCATGGTT GGTCTATAGT
GAATTATCTA GTTTGTTGCA CAATACATAT CATTATTGGG AAGCAATTAA CTTAGCCTAC
AAGGTTATTC GTTGTGATAG CAACGTTGCT GTCGCCTGGA ATGTGGTGGC GCTTGTTTAT
TTAAAATTCG AAAATATGTC TGGGGCTGAA GTCTGTCTAG AAAAAGCGAT GCAACTTCTA
CCTAACGATG CGGCAATACT GAATGGTATG GCGATGGTGT TGGATAAAAA ATCCAATGTC
GAAAGTGCAA TTGATTATTA TCGCCGAGCG GTTGCCGCAG CTCCAGATGA TTTAAGTATA
TACAGTAACC TTTTATTTGC TTTACTACAT AATGCCAATA TCCCGGCTTC AGAGGTTTTT
GCTGAGCATT TATTGTATGG CGAAGCGGTA GAAAAACGGA TTGGTGCGAG TACACCTGTA
CACTATCTAC AAAATAAAGA TCCCAACAGA GTATTACGTA TTGGTTTTGT TTCTGGCGAT
TTATATTCAC ATCCCGTCAG CAAATTCTTA TCGCCGGTAT GGAATGACAT AAACCCTCAA
CACTTTGCCC TTTATGCCTA TTCCACATCA CATCATTATG ATGAAGTGAC TCGTATGCTG
GAAGAACGTT CAGCTGTGTG GCGTAACGTG GCGAGCAGTA GCGACACGGA ATTATTCGAA
CTGATTAAAC AGGATGAGAT AGATATTCTT TTCGATCTTT CCGGTCACAC TGGCGATAAC
CGCTTGTCAA TGTTCGCTAT GAAGCCTGCA CCGATCCAGA TTAGCTGGAT TGGTTACCCG
GGAACGACGG GATTAAAAGC GATGGATTAC TATCTGGTCA TGAACCATGC CCCATATCCA
GAAGTTTTAG CCCATCAATT TACTGAAAAA TTACTGTATG TGCTATTTGA CCGACAATTT
GAACCGGTAG TTAATGGCCC TGATGTTAAC GATCTTCCTG CGTTGAAAAA CGGTTATCTC
ACGTTCGCCA GCTTCAACAG ACCGACTAAG ATTAACGATA CGGTATTATC GGCATGGGGA
AAAATCCTCG TTCAGTTACC AACCAGCAAG ATGATTATTG GTGCGTTGCC TAGCCAGCAG
TCGAGAGAAC ATATACGTAA AAGGTTAGAG TCGCAGGGTG TTCAACCTGA TCAGCTGATT
TTCCGCGAAC GTGTCAACAT AATGAGTTAT CTGGCTATGC ACCAGGAAAT TGATGTGCTG
CTGGATACGT TCCCCTATAC CGGGGGAACC ACGACGAACT ATGCGTTATG GATGGGCGTG
CCGACTCTGA CGCTAGCCGG TGAAACCTAT GCTGCTCGCC AAGGGGTGGT AAACCTTGGC
CAGGCTGGTT TGAATGAGTT TATTGCAGAT TCAGAAGCTG ACTATATCGA CAAGGCTATT
TCCTGGAATA ACCGGTTGGA TGAACTGAAT CAAATTCGCC ATAGTTTACG CAAGAAAATG
GCGCATGACG TCGGTGCTGA TAATGTAACC GCCGCCACCT ATTTCGAGCA GGCGCTAAGA
ATGGTATGGA AAGCTTACTG TGCCGGTGAG CCGCCTAAGA GTTATGCGAT AGGTCACTCA
CCGGTGCCAT GA
|
|---|
| Protein sequence | MTLDTAASHP TTSAADRCPL PYTSPTHLQA VAYLHGIVAA DPDRARVLEL GCVSGANLLP
FATAYPQAQA IGIDLDEEKI AQGQMWVQQY GLTNLQLQAM DLASLLDSHL GKFDYIIVHG
VFGLVSGEAR SALLAYCHRH LSAKGVVCFS YSTYPGGKTE EILQDALNLH ASLAETPEQQ
QASARAMLSY LSLGMSANNP QRAAIATLVE EAEQLGDVSL ALNYLQGLNQ PCYLLDFNAL
IKQEGLAYVG EIEPHTEIAS HYGDQVDNLL RTICPTGNKI LKQQYLDFNV GRKRRFSLLV
AAERAEKLES EIDVSRLDKL SWAGSFRRSM LNKGLASNAY STNTGIQIST DHELTQQILD
VLGNAWPASV SFKELIFNTH FPEKENDKHE HENNVRESLY ALLKQGLSSI HFCVGECAYR
KSEFSTLRVL PNCGGNYPVF NYWYESFTLP SEAQGLKIPM DLLDEQNEGS LALLDELHHK
GLMVGSALAW QRYFQKRLEL AKDVKEVIHN INPLLIYSSN ASGGGLFKAS DAIKVEKSRK
EFVNNAIDAK VKHQLYELLK QQKYNEARSL AEELTIKQPN NLQNWITLER INFVTGDKNA
AIFSLAKVIS MYSNAWLVYS ELSSLLHNTY HYWEAINLAY KVIRCDSNVA VAWNVVALVY
LKFENMSGAE VCLEKAMQLL PNDAAILNGM AMVLDKKSNV ESAIDYYRRA VAAAPDDLSI
YSNLLFALLH NANIPASEVF AEHLLYGEAV EKRIGASTPV HYLQNKDPNR VLRIGFVSGD
LYSHPVSKFL SPVWNDINPQ HFALYAYSTS HHYDEVTRML EERSAVWRNV ASSSDTELFE
LIKQDEIDIL FDLSGHTGDN RLSMFAMKPA PIQISWIGYP GTTGLKAMDY YLVMNHAPYP
EVLAHQFTEK LLYVLFDRQF EPVVNGPDVN DLPALKNGYL TFASFNRPTK INDTVLSAWG
KILVQLPTSK MIIGALPSQQ SREHIRKRLE SQGVQPDQLI FRERVNIMSY LAMHQEIDVL
LDTFPYTGGT TTNYALWMGV PTLTLAGETY AARQGVVNLG QAGLNEFIAD SEADYIDKAI
SWNNRLDELN QIRHSLRKKM AHDVGADNVT AATYFEQALR MVWKAYCAGE PPKSYAIGHS
PVP
|
|---|
| |