| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2554 |
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| Symbol | |
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| ID | 8133501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2918693 |
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| End bp | 2920372 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644865837 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_003018121 |
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| Protein GI | 253688931 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0102453 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATATG ATTACATCAT TATCGGAGCC GGTTCCGCAG GTAATGTGCT GGCAACGCGT
TTAACAGAAG AAAGCGACGT CAGCGTGCTG CTGCTTGAGG CAGGCGGTCC AGACTATCGG
TTGGATTTTC GCACGCAAAT GCCTGCCGCA TTAGCGTTCC CACTACAAGG GAAGCGTTAT
AACTGGGCTT ATGAAACCGA CCCGGAACCG CACATGAATA ACCGCCGTAT GGAATGCGGC
CGTGGCAAAG GGCTGGGTGG CTCATCGCTG ATTAACGGCA TGTGCTACAT CCGTGGCAAT
GCGATGGATT TCGATAACTG GGCGACGATG CCGGGCCTGG AAGACTGGAG TTACCTTGAT
TGCCTGCCGT ATTTCCGCAA AGCAGAAACG CGGGATGTGG GCTCGAATGA CTATCATGGT
GCGACGGGGC CGGTTTCCGT GGCCACGCCG AAGATGGGAA ACAACGAACT GTTTCACGCG
ATGGTTGAAG CGGGCGTACA GGCGGGTTAT CCGCGTACCG ACGATCTTAA CGGCTATCAG
CAGGAAGGCT TTGGGCCGAT GGACAGAACC GTCACGCCGA AGGGGCGTCG CGCCAGTACC
GCGCGAGGTT ATCTGGATCA GGCGAAAGGT CGTAAAAATC TGACCATCGT GACGCACGCC
TTAACCGACA AGATTCTCTT TGAGGGAAAA CGTGCCGTTG GTGTCGCTTA CTTTAAAGGC
GAAAGCCCGC AAACAGTGCA GGCGCGTCGT GAAGTACTGC TATGTGCTGG TGCGATCGCC
TCGCCGCAGA TCTTGCAACG CTCCGGCGTG GGGCCGAAAG ATCTGCTCCA GGGGCTCGAT
ATTCCCGTTG TGCACGATTT GCCCGGTGTC GGTGAGAATT TACAGGATCA CCTGGAGATG
TATTTGCAAT ACGCCTGCAA AGAGCCGGTA TCGCTGTATC CGGCGCTACA GTGGTTTAAT
CAGCCGAAGA TCGGGGCAGA GTGGCTGTTT AGCGGCACAG GCATTGGTGC CAGCAACCAG
TTTGAAGCGG GGGGGTTTAT TCGCAGTCGC GATGAGTTCG CCTGGCCGAA CATTCAATAC
CATTTTCTCC CGGTCGCGAT TAACTACAAC GGCAGTAACG CGGTAAAAGA ACACGGGTTC
CAGGCGCATG TGGGCTCTAT GCGTTCGCTC AGCCGTGGGC GCGTTCAGGT GCGCTCCAAA
GATGCTCGTG AGCACCCCAG CATCCTGTTC AACTATATGT CGACAGAACA GGATTGGCAG
GAGTTTCGCG ATGCGATCCG TATTACGCGT GAAATCATGG CGCAGCCTGC GCTGGATAAA
TACCGTGGGC GAGAGATCAG CCCTGGCCTG GAAGTGCAGA CCGATGAGGA ACTGGATGAG
TTTATCCGTA CTCACGCTGA GACGGCATTC CATCCCTCCT GTTCCTGCAA AATGGGAGAG
GACGAGATGG CAGTGGTCGA TGGACAAGGC CGTGTCCACG GTATGGAAGG ATTGCGTGTT
GTCGATGCTT CCATCATGCC GCAAATTATT ACCGGCAATC TGAATGCGAC AACCATTATG
ATTGCTGAGA AAATTGCTGA TCGAATCCGC CGGCGTCAGC CGCTGCCGCG TAGCAGGGCG
CGTTACTACG TGTCGGGAAA TACTCCGGTC AGAAAAGCGC CGCTGAAACC AGCCTCATAA
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| Protein sequence | MEYDYIIIGA GSAGNVLATR LTEESDVSVL LLEAGGPDYR LDFRTQMPAA LAFPLQGKRY
NWAYETDPEP HMNNRRMECG RGKGLGGSSL INGMCYIRGN AMDFDNWATM PGLEDWSYLD
CLPYFRKAET RDVGSNDYHG ATGPVSVATP KMGNNELFHA MVEAGVQAGY PRTDDLNGYQ
QEGFGPMDRT VTPKGRRAST ARGYLDQAKG RKNLTIVTHA LTDKILFEGK RAVGVAYFKG
ESPQTVQARR EVLLCAGAIA SPQILQRSGV GPKDLLQGLD IPVVHDLPGV GENLQDHLEM
YLQYACKEPV SLYPALQWFN QPKIGAEWLF SGTGIGASNQ FEAGGFIRSR DEFAWPNIQY
HFLPVAINYN GSNAVKEHGF QAHVGSMRSL SRGRVQVRSK DAREHPSILF NYMSTEQDWQ
EFRDAIRITR EIMAQPALDK YRGREISPGL EVQTDEELDE FIRTHAETAF HPSCSCKMGE
DEMAVVDGQG RVHGMEGLRV VDASIMPQII TGNLNATTIM IAEKIADRIR RRQPLPRSRA
RYYVSGNTPV RKAPLKPAS
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