| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2495 |
|---|
| Symbol | |
|---|
| ID | 8133441 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 2862461 |
|---|
| End bp | 2863894 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644865777 |
|---|
| Product | PTS system glucose-specific transporter subunits IIBC |
|---|
| Protein accession | YP_003018062 |
|---|
| Protein GI | 253688872 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific |
|---|
| TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component
[TIGR00852] PTS system, maltose and glucose-specific subfamily, IIC component
[TIGR02002] PTS system, glucose-specific IIBC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00256053 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGA ATGCATTCGC AAACCTGCAA AAAGTAGGTA AGTCGCTAAT GCTGCCCGTA
TCCGTACTCC CTATCGCAGG TATTCTGCTG GGTGTCGGTT CGGCCAATTT TAGCTGGTTG
CCTGAAATTG TCTCCAGCGT CATGGCGCAG GCCGGTGACT CGGTGTTTGC CAACATGCCG
CTGATTTTTG CTATTGGTGT TGCCCTGGGC TTCACCAATA ACGACGGTGT TTCCGCACTG
GCGGCGGTGG TAGCTTATGG CATCATGGTA AAAACCATGG CTGCGATTGC ACCGCTGGTT
CTTAATCTAC CGGCTGCCGA GATTACAGCG AAGCACCTGG CGGATACCGG TGTTCTGGGC
GGGATCATTG CCGGTGCGAT TGCCGCGTAT ATGTTTAATC GCTTCTACCG CATTCAACTG
CCTGAGTATC TGGGTTTCTT TGCCGGTAAA CGTTTTGTGC CGATTATTTC CGGTCTGACG
GCGATCGTTA CCGGTGCGGT GTTGTCTTTC ATATGGCCGC CGGTCGGTAG CGCTATCCAA
ACGTTTTCAC ATTGGGCTGC GAATGAGAAC CCGATGTTGG CATTCGGTAT CTATGGGGTC
GTTGAACGTT CTCTGGTACC GTTTGGTCTG CACCATATCT GGAACGTACC TTTCCAAATG
CAGGTTGGTG AATTCACCAA TGCAGCGGGA CAGGTTTTCC ACGGTGATAT CCCACGTTAC
ATCGCTGGTG ACCCGACTGC GGGTAAATTG TCTGGTGGTT TCCTGTTTAA AATGTACGGT
TTGCCGGCTG CAGCTATCGC TATCTGGCAC TCTGCTAAGC CAGAAAACCG CGCGAAAGTG
GGCGGCATCA TGATCTCTGC GGCGCTGACC TCGTTCCTGA CGGGTATCAC TGAGCCAATT
GAGTTCTCAT TCATGTTTGT TGCGCCAATC CTGTATGTGA TCCATGCGAT TCTGGCGGGT
CTGGCGTTCC CAATCTGTAT CCTGCTGGGT ATGCGTGATG GGACCAGCTT CTCTCACGGT
CTGATCGACT TCGTGGTACT GAGCGGTAAC GGTAGCAACC TGTGGCTGTT CCCGATTGTG
GGTCTGTGCT ATGCGCTGAT TTACTACACC ATCTTCCGCG TTCTGATTGC GAAACTGAAC
CTGAAAACGC CAGGCCGTGA AGATAGCTCT TCTGAGCAAG CGTCACAGGA CAGCACTGAA
ATGGCTGCCG CACTGGTTAG CGCGTTTGGT GGTAAAGAAA ACATCACTAA CCTGGACGCG
TGCATCACCC GTCTGCGCGT TAGCGTAGGC GATGTGGCTA AAGTTGATCA GGCTGGCCTG
AAAAAACTGG GCGCAGCAGG TGTGGTTGTG GCAGGTTCCG GTGTTCAGGC CATTTTCGGT
ACCAAATCCG ATAACCTGAA AACCGATATG GACGACTACA TCCGTAACCA CTGA
|
|---|
| Protein sequence | MFKNAFANLQ KVGKSLMLPV SVLPIAGILL GVGSANFSWL PEIVSSVMAQ AGDSVFANMP
LIFAIGVALG FTNNDGVSAL AAVVAYGIMV KTMAAIAPLV LNLPAAEITA KHLADTGVLG
GIIAGAIAAY MFNRFYRIQL PEYLGFFAGK RFVPIISGLT AIVTGAVLSF IWPPVGSAIQ
TFSHWAANEN PMLAFGIYGV VERSLVPFGL HHIWNVPFQM QVGEFTNAAG QVFHGDIPRY
IAGDPTAGKL SGGFLFKMYG LPAAAIAIWH SAKPENRAKV GGIMISAALT SFLTGITEPI
EFSFMFVAPI LYVIHAILAG LAFPICILLG MRDGTSFSHG LIDFVVLSGN GSNLWLFPIV
GLCYALIYYT IFRVLIAKLN LKTPGREDSS SEQASQDSTE MAAALVSAFG GKENITNLDA
CITRLRVSVG DVAKVDQAGL KKLGAAGVVV AGSGVQAIFG TKSDNLKTDM DDYIRNH
|
|---|
| |