Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2476 |
Symbol | lolD |
ID | 8133422 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 2840596 |
End bp | 2841303 |
Gene Length | 708 bp |
Protein Length | 235 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 644865758 |
Product | lipoprotein transporter ATP-binding subunit |
Protein accession | YP_003018043 |
Protein GI | 253688853 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.637177 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAATT TATCGTTATT GCAGTGCAAC AACCTGTCCA AGCGCTATCA GGACGGCAAG CTGTCGACTG ACGTGTTGCG CGACGTCTCT TTTGAGATGA GCAGCGGGGA GATGATGGCA ATCGTCGGGA GTTCCGGTTC GGGCAAAAGT ACGTTGCTGC ATGTGCTGGG CGGGTTGGAT ACGCCGACGT CGGGCGAGGT TATCTTTAAA GGTCAGTCGC TGAATACACT TTCGGCGGCG GCAAAGGCAG ATTTACGCAA CCGCGAGCTG GGTTTTATTT ATCAATTCCA CCATCTGTTG CCGGATTTCA CCGCGCTGGA AAATGTGGCG ATGCCGCTGC TGATTGGTAA AGTGCCAACC TCGCAGGCGC AGGATAAAGC ACGGGAAATG CTGGCGGCTG TCGGGCTGGA GGCGCGCAGC CACCACCGTT CGTCGGAGCT GTCCGGCGGT GAGCGGCAGC GCGTCGCTAT TGCCAGAGCG TTGGTTAACA GCCCGTCGCT GGTGCTGGCG GACGAGCCGA CGGGTAACCT CGACCAGCGC ACGGCGGATA CCATTTTCGA ACTGCTGGGA GAGCTAAACG TCCGGCAGGG CACTGCGTTT TTGGTGGTGA CGCACGATCT GCAACTGGCT AGCCGACTGA ACCGCCAACT GGAAATGCGT GATGGTCAAT TGCAGCAAGA GCTGACCCTG ATGGGAGCGC GGCAATGA
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Protein sequence | MSNLSLLQCN NLSKRYQDGK LSTDVLRDVS FEMSSGEMMA IVGSSGSGKS TLLHVLGGLD TPTSGEVIFK GQSLNTLSAA AKADLRNREL GFIYQFHHLL PDFTALENVA MPLLIGKVPT SQAQDKAREM LAAVGLEARS HHRSSELSGG ERQRVAIARA LVNSPSLVLA DEPTGNLDQR TADTIFELLG ELNVRQGTAF LVVTHDLQLA SRLNRQLEMR DGQLQQELTL MGARQ
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