Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2474 |
Symbol | |
ID | 8133420 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 2838353 |
End bp | 2839267 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644865756 |
Product | ROK family protein |
Protein accession | YP_003018041 |
Protein GI | 253688851 |
COG category | [G] Carbohydrate transport and metabolism [K] Transcription |
COG ID | [COG1940] Transcriptional regulator/sugar kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.480455 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTACTACG GTTTTGACAT GGGCGGAACG AAAATTGAGC TGGGCGTGTT CGACGCCGAG CTGAACAAAG TATGGCAAAA GCGGGTGTTG ACACCGCGTA CGCATTACGA TGAGCTGCTC ACTACGCTGG TTGATCTGGT GCATGAGGCC GACGCACAGG TCGGTGTACA GGGCAAGGTC GGTATTGGCA TACCGGGAAT ACAAACGGGC GATAACGATG CGCTGTTTAC CGCTAATCTG CCTGCGGCGA TGGGCAAACC ACTGCGTACG GATCTGTCGC AGCGTTTGCA GCGAGATGTT CGTATCAACA ACGATGCCAA CTGCTTTGTG CTGTCGGAAG CGTGGGACGC GGAATTTCGT TCCTATCCTG TCGTTTTGGG CCTAATTTTG GGGACGGGTC TGGGCGGTGG ACTGGTGATT AACGGGCGTC CGGTGGACGG GCGCAACGGT ATCGCCGGTG AATTTGGTCA TCTCCGCCTG CCGTCCGACG CGCTGGATAT CATCGGGGTG GACATTCCCC GCGTGAAGTG CGGTTGCGGG CAATCTGGCT GCATCGAGAA TTATATTTCC GGTCGTGGTT TTGAATGGCT ATATGAGCAT ATGTATGGTG AAGCTCTGCC TGCCGTAACC ATCATCCGGC ACTATCGTGG TGGAGAGGAA AAAGCACGAG AGTTTGTCGA CCGTTTTATG GATTTGCTGG CGGCCTGTTT GGGTAACCTG CTGACCCTAT TCGATCCGCA TCTGCTGGTG CTAGGCGGCG GCCTGTCGAA TTTTGATGAA ATTTATCAGA TTCTGCCGAC GCGTCTTCCT TCACGACTTT TACCGATTGC GAAACTGCCA CGGATAGAGA AAGCGCGTCA CGGTGATGCG GGCGGCGTAC GTGGCGCGGC GTTGCTACAC TTAATGGATA ACTAG
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Protein sequence | MYYGFDMGGT KIELGVFDAE LNKVWQKRVL TPRTHYDELL TTLVDLVHEA DAQVGVQGKV GIGIPGIQTG DNDALFTANL PAAMGKPLRT DLSQRLQRDV RINNDANCFV LSEAWDAEFR SYPVVLGLIL GTGLGGGLVI NGRPVDGRNG IAGEFGHLRL PSDALDIIGV DIPRVKCGCG QSGCIENYIS GRGFEWLYEH MYGEALPAVT IIRHYRGGEE KAREFVDRFM DLLAACLGNL LTLFDPHLLV LGGGLSNFDE IYQILPTRLP SRLLPIAKLP RIEKARHGDA GGVRGAALLH LMDN
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